MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.4 nTPM
HPA Brain:21.4 nTPM
GTEx:14.4 nTPM
FANTOM5:17.2 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:22.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
2411 Female, age 72, unknown 22.0
2828 Female, age 72, unknown 21.6
2586 Male, age 75, left hemisphere 21.5
1870 Female, age 42, unknown 20.2
1827 Male, age 72, unknown 19.3
2219 Male, age 76, both hemispheres 19.3
2019 Male, age 18, unknown 19.2
1833 Male, age 53, unknown 18.7
1830 Male, age 51, unknown 18.4
2666 Male, age 74, left hemisphere 14.2
Dorsal raphe nucleus
nTPM: 20.5
2298 Female, age 72, unknown 23.8
2016 Female, age 72, unknown 21.3
2750 Male, age 76, both hemispheres 19.8
2047 Male, age 72, unknown 19.6
1828 Male, age 53, unknown 18.2
Inferior colliculus
nTPM: 20.6
2097 Female, age 72, unknown 24.6
1848 Female, age 42, unknown 20.0
1890 Male, age 53, unknown 19.0
2849 Male, age 72, unknown 18.8
Median raphe nucleus
nTPM: 17.6
2220 Male, age 76, midline 17.6
Periaquaductal grey, anterior
nTPM: 21.4
2502 Female, age 75, unknown 23.0
1947 Male, age 18, unknown 21.0
1795 Male, age 51, unknown 20.1
Periaquaductal grey, dorsal
nTPM: 18.1
1840 Male, age 53, unknown 19.8
2464 Female, age 72, unknown 19.6
1831 Male, age 72, unknown 17.0
2850 Male, age 76, both hemispheres 16.0
Periaquaductal grey, lateral
nTPM: 20.4
2272 Male, age 74, both hemispheres 23.1
2140 Male, age 76, both hemispheres 19.7
2053 Male, age 18, unknown 18.3
Pretectal area
nTPM: 19.6
2273 Male, age 74, both hemispheres 23.9
2224 Female, age 72, unknown 22.8
2007 Male, age 72, unknown 20.8
1817 Female, age 42, unknown 20.0
2316 Male, age 76, right hemisphere 19.9
2825 Male, age 18, unknown 19.7
2667 Female, age 75, unknown 19.5
1816 Male, age 51, unknown 18.9
1815 Male, age 53, unknown 18.0
1944 Female, age 72, unknown 16.7
2407 Male, age 75, both hemispheres 16.0
Red nucleus
nTPM: 20.2
2227 Male, age 72, unknown 22.7
2769 Male, age 72, unknown 22.5
1904 Male, age 53, unknown 22.1
2503 Female, age 72, unknown 21.6
1954 Female, age 42, unknown 21.2
1821 Female, age 72, unknown 20.9
2785 Male, age 18, unknown 20.2
1865 Male, age 51, unknown 19.2
2725 Female, age 75, unknown 19.1
2588 Male, age 74, left hemisphere 18.4
2823 Male, age 76, right hemisphere 17.6
2584 Male, age 75, left hemisphere 16.7
Substantia nigra
nTPM: 17.9
1916 Female, age 42, unknown 21.3
1851 Male, age 51, unknown 19.5
1889 Female, age 72, unknown 18.4
2590 Female, age 75, unknown 18.4
1941 Male, age 53, unknown 18.2
2583 Male, age 75, right hemisphere 18.2
2699 Male, age 18, unknown 17.7
2665 Male, age 74, both hemispheres 16.6
2241 Male, age 72, unknown 15.2
2409 Female, age 72, unknown 15.1
Superior colliculus
nTPM: 19.3
1796 Male, age 53, unknown 21.6
2261 Male, age 18, unknown 21.6
2587 Male, age 74, left hemisphere 21.1
1839 Male, age 51, unknown 20.6
1995 Male, age 72, unknown 20.0
1913 Female, age 42, unknown 19.8
2668 Female, age 75, unknown 18.1
1895 Male, age 76, right hemisphere 17.8
2087 Female, age 72, unknown 16.1
2664 Male, age 75, both hemispheres 16.0
Ventral tegmental area
nTPM: 19.7
2410 Female, age 72, unknown 22.9
1942 Male, age 51, unknown 20.0
2021 Male, age 53, unknown 19.0
2223 Female, age 72, unknown 18.9
1915 Female, age 42, unknown 18.6
2218 Male, age 76, both hemispheres 18.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.4
Samples: 139

Max nTPM: 20.6
Min nTPM: 9.7
Std nTPM: 1.9
Median nTPM: 14.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 20.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 19.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 19.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 18.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 18.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 18.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 17.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 17.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 17.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.2
FF:10158-103A5 76 years, female 17.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 26.1
Min nTPM: 18.5
Sample A Female 26.1
Sample B Female 19.7
Sample C Male 21.7
Sample D Male 18.5
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 33.1
Min nTPM: 19.6
Sample A Female 33.1
Sample B Female 19.6
Sample C Male 23.0
Sample D Male 20.7
Periaqueductal gray
nTPM: 20.6
Samples: 3

Max nTPM: 21.9
Min nTPM: 18.7
Sample B Female 21.1
Sample C Male 21.9
Sample D Male 18.7
Superior colliculi
nTPM: 24.9
Samples: 4

Max nTPM: 28.7
Min nTPM: 22.6
Sample A Female 28.7
Sample B Female 25.5
Sample C Male 22.7
Sample D Male 22.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.9
Samples: 4

Max nTPM: 24.9
Min nTPM: 21.5
Sample A Male 24.9
Sample B Male 22.3
Sample C Female 21.5
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69014800 Antisense, RP_050310_01_G04, Mouse strain C57BL/6J (56 days, male) 0.6

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