PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:42.4 nTPM
FANTOM5:59.9 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:32.6 nTPM
Allen mouse:7.4 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 25.9
2090 Male, age 80, both hemispheres 29.8
1984 Male, age 76, both hemispheres 28.6
2188 Female, age 91, both hemispheres 25.3
2301 Female, age 85, both hemispheres 19.8
Area postrema
nTPM: 36.3
2799 Male, age 61, both hemispheres 50.7
2054 Male, age 76, both hemispheres 32.6
2306 Male, age 80, both hemispheres 25.6
Dorsal cochlear nucleus
nTPM: 37.0
2802 Male, age 74, right hemisphere 47.1
2058 Male, age 76, both hemispheres 42.6
2370 Male, age 61, both hemispheres 35.0
2378 Male, age 80, both hemispheres 33.3
2187 Female, age 91, both hemispheres 27.1
Dorsal medullary reticular nucleus
nTPM: 35.8
2040 Female, age 85, both hemispheres 43.1
2088 Male, age 76, both hemispheres 33.1
2373 Male, age 61, both hemispheres 31.0
Dorsal motor vagal complex
nTPM: 35.3
2643 Male, age 74, both hemispheres 44.9
2797 Male, age 61, both hemispheres 44.8
2844 Male, age 55, unknown 38.7
2133 Female, age 91, both hemispheres 38.1
2813 Female, age 72, unknown 31.7
2000 Male, age 74, unknown 31.6
2185 Male, age 76, both hemispheres 27.9
2807 Female, age 85, both hemispheres 24.4
Dorsal tegmental nucleus
nTPM: 41.0
2358 Male, age 61, both hemispheres 52.9
2083 Male, age 80, both hemispheres 40.8
2326 Male, age 74, both hemispheres 35.7
1936 Male, age 76, left hemisphere 34.4
Dorsolateral tegmental area
nTPM: 32.7
2141 Male, age 76, both hemispheres 37.5
2654 Male, age 80, both hemispheres 34.7
2751 Female, age 85, both hemispheres 34.7
2337 Male, age 61, both hemispheres 29.5
2360 Male, age 74, both hemispheres 26.9
Gigantocellular reticular nuclei, medullary
nTPM: 33.1
1876 Female, age 85, both hemispheres 36.6
2462 Male, age 74, both hemispheres 35.5
2022 Male, age 76, right hemisphere 34.1
2387 Female, age 91, both hemispheres 33.3
2310 Male, age 80, both hemispheres 30.5
2314 Male, age 61, both hemispheres 28.4
Gigantocellular reticular nuclei, pars
nTPM: 31.5
2084 Female, age 85, both hemispheres 38.9
2168 Male, age 76, both hemispheres 38.6
2336 Male, age 61, both hemispheres 29.1
2330 Male, age 80, both hemispheres 27.5
2706 Male, age 80, both hemispheres 23.4
Inferior olive
nTPM: 33.1
2563 Male, age 74, both hemispheres 38.9
2085 Female, age 85, both hemispheres 34.9
2379 Male, age 80, both hemispheres 34.7
2178 Male, age 61, both hemispheres 28.9
2628 Female, age 91, both hemispheres 28.0
Kolliker-Fuse nucleus
nTPM: 29.3
2163 Male, age 80, both hemispheres 31.7
2315 Male, age 76, right hemisphere 29.6
2793 Female, age 91, left hemisphere 26.7
Lateral lemniscal nuclei
nTPM: 29.7
2453 Male, age 74, right hemisphere 35.0
2169 Male, age 76, both hemispheres 30.7
2746 Female, age 85, left hemisphere 30.4
2036 Male, age 80, both hemispheres 29.9
2320 Female, age 91, left hemisphere 22.4
Lateral medullary reticular nucleus
nTPM: 30.1
2044 Male, age 76, both hemispheres 36.4
2804 Female, age 91, both hemispheres 36.4
2852 Male, age 80, both hemispheres 30.8
2305 Male, age 74, both hemispheres 26.2
2190 Female, age 85, both hemispheres 26.1
2374 Male, age 61, both hemispheres 24.7
Lateral parabrachial nucleus
nTPM: 36.9
2790 Male, age 61, both hemispheres 46.4
2139 Female, age 85, right hemisphere 40.5
2013 Male, age 80, both hemispheres 34.5
2792 Male, age 76, both hemispheres 26.0
Lateral vestibular nucleus
nTPM: 30.9
2311 Male, age 80, both hemispheres 31.6
2184 Male, age 76, both hemispheres 30.2
Locus coeruleus
nTPM: 42.4
2123 Female, age 91, both hemispheres 55.9
1980 Male, age 76, both hemispheres 43.9
2014 Male, age 55, unknown 43.5
2317 Female, age 72, unknown 42.8
2720 Male, age 74, both hemispheres 42.5
2162 Male, age 80, both hemispheres 34.7
2788 Male, age 74, unknown 33.4
Medial olivary nucleus
nTPM: 29.8
2138 Female, age 91, both hemispheres 36.7
1962 Male, age 76, both hemispheres 29.0
2851 Male, age 80, both hemispheres 28.5
1943 Male, age 61, both hemispheres 25.0
Medial parabrachial nucleus
nTPM: 33.5
2156 Male, age 61, both hemispheres 36.3
2170 Female, age 91, both hemispheres 35.0
2463 Female, age 85, right hemisphere 34.6
2854 Male, age 80, both hemispheres 31.7
2786 Male, age 76, both hemispheres 30.2
Medial periolivary nuclei
nTPM: 33.8
2063 Male, age 76, both hemispheres 47.1
2171 Female, age 85, both hemispheres 37.5
2791 Male, age 74, right hemisphere 32.0
2081 Male, age 80, both hemispheres 30.2
2458 Female, age 91, both hemispheres 22.0
Medial vestibular nucleus
nTPM: 34.0
2743 Female, age 85, both hemispheres 37.2
2134 Male, age 76, both hemispheres 35.5
2093 Male, age 80, both hemispheres 35.1
2803 Female, age 91, both hemispheres 34.4
2801 Male, age 74, both hemispheres 31.8
2624 Male, age 61, both hemispheres 30.1
Motor facial nucleus
nTPM: 32.6
2062 Male, age 76, both hemispheres 50.5
2795 Female, age 91, both hemispheres 35.2
2365 Male, age 74, right hemisphere 33.9
2126 Male, age 61, both hemispheres 29.3
2327 Male, age 80, both hemispheres 23.4
2697 Female, age 85, both hemispheres 23.0
Motor hypoglossal nucleus
nTPM: 29.9
2125 Female, age 91, both hemispheres 37.7
2132 Female, age 85, both hemispheres 32.3
2461 Male, age 61, both hemispheres 28.0
2277 Male, age 76, both hemispheres 27.9
2182 Male, age 80, both hemispheres 23.4
Motor trigeminal nucleus
nTPM: 29.7
2309 Male, age 76, both hemispheres 33.5
2079 Male, age 80, both hemispheres 32.4
2560 Male, age 74, both hemispheres 31.7
2335 Male, age 61, both hemispheres 28.5
2321 Female, age 91, both hemispheres 22.6
Nuclei of the trapezoid body
nTPM: 35.6
1983 Male, age 76, both hemispheres 44.8
2735 Female, age 85, both hemispheres 42.2
2159 Male, age 61, both hemispheres 33.1
2368 Female, age 91, both hemispheres 30.0
2166 Male, age 80, both hemispheres 27.9
Nucleus ambiguus
nTPM: 32.3
2071 Male, age 76, both hemispheres 33.8
2096 Female, age 85, both hemispheres 30.8
Nucleus cuneatus
nTPM: 34.4
2564 Male, age 74, both hemispheres 42.2
2805 Female, age 91, both hemispheres 42.1
2131 Male, age 76, both hemispheres 37.5
2100 Male, age 76, both hemispheres 37.0
2562 Male, age 61, both hemispheres 36.6
2376 Male, age 61, both hemispheres 32.7
2380 Male, age 80, both hemispheres 30.5
2381 Male, age 80, both hemispheres 26.9
2808 Female, age 85, both hemispheres 24.2
Nucleus gracilis
nTPM: 29.5
2627 Male, age 74, both hemispheres 32.8
2382 Male, age 80, both hemispheres 29.8
2299 Female, age 85, both hemispheres 25.9
Nucleus raphe magnus
nTPM: 33.7
2160 Male, age 61, both hemispheres 40.8
2051 Male, age 76, both hemispheres 36.2
2172 Female, age 85, both hemispheres 35.8
2455 Male, age 74, both hemispheres 34.1
2328 Male, age 80, both hemispheres 28.0
2459 Female, age 91, both hemispheres 27.2
Nucleus raphe obscurus
nTPM: 28.4
2800 Male, age 61, midline 30.2
2845 Female, age 85, midline 29.7
2142 Male, age 76, midline 25.2
Nucleus raphe pallidus
nTPM: 29.6
2183 Male, age 80, midline 34.6
1924 Male, age 61, midline 34.5
2145 Male, age 76, midline 19.7
Nucleus tractus solitarii
nTPM: 29.9
2656 Male, age 76, both hemispheres 37.4
2144 Female, age 91, right hemisphere 32.7
2307 Male, age 80, both hemispheres 25.5
2191 Female, age 85, both hemispheres 24.1
Paramedian reticular nucleus
nTPM: 36.1
2050 Female, age 85, both hemispheres 43.3
2057 Male, age 80, both hemispheres 36.7
2313 Male, age 61, both hemispheres 34.5
2052 Male, age 76, both hemispheres 29.8
Parvicellular reticular nuclei
nTPM: 35.5
2558 Male, age 74, both hemispheres 37.9
2119 Male, age 80, both hemispheres 36.7
2095 Male, age 76, both hemispheres 31.9
Parvicellular reticular nuclei, medullary
nTPM: 33.7
2189 Female, age 91, both hemispheres 38.0
2091 Female, age 85, both hemispheres 36.1
2181 Male, age 80, left hemisphere 27.1
Pedunculopontine tegmental nucleus
nTPM: 36.0
1921 Female, age 85, both hemispheres 38.4
2334 Male, age 80, both hemispheres 35.7
2338 Male, age 61, both hemispheres 33.8
Peritrigeminal nucleus
nTPM: 38.1
2067 Female, age 85, both hemispheres 45.3
2136 Male, age 76, both hemispheres 37.1
2179 Male, age 61, both hemispheres 32.0
Pontine nuclei
nTPM: 38.8
1863 Male, age 55, unknown 56.3
2787 Female, age 85, both hemispheres 51.6
1968 Male, age 76, left hemisphere 39.9
2109 Female, age 72, unknown 39.3
2727 Male, age 61, right hemisphere 39.1
2115 Male, age 80, left hemisphere 30.6
2454 Male, age 74, left hemisphere 26.8
2319 Female, age 91, both hemispheres 26.7
Pontine raphe nucleus
nTPM: 39.8
2122 Female, age 85, midline 41.3
2853 Male, age 76, midline 38.2
Posteroventral cochlear nucleus
nTPM: 33.1
2752 Female, age 85, both hemispheres 40.1
2371 Male, age 61, both hemispheres 35.2
2341 Male, age 80, both hemispheres 32.7
2070 Male, age 76, both hemispheres 29.9
2135 Female, age 91, both hemispheres 27.8
Prepositus hypoglossal nucleus
nTPM: 35.1
2086 Male, age 80, both hemispheres 35.3
2855 Female, age 85, right hemisphere 35.0
Principal sensory trigeminal nucleus
nTPM: 30.3
2158 Male, age 61, both hemispheres 36.9
2008 Male, age 80, left hemisphere 33.9
2324 Male, age 76, both hemispheres 27.2
2367 Female, age 91, left hemisphere 23.3
Reticular pontine nucleus, caudal
nTPM: 31.7
2092 Male, age 76, both hemispheres 39.3
2457 Female, age 91, both hemispheres 33.7
2332 Male, age 80, right hemisphere 27.1
2559 Male, age 74, both hemispheres 26.7
Reticular pontine nucleus, oral
nTPM: 34.3
2012 Female, age 85, both hemispheres 40.7
1939 Male, age 80, both hemispheres 36.8
2167 Male, age 76, both hemispheres 36.6
2361 Male, age 74, both hemispheres 34.9
2366 Female, age 91, both hemispheres 22.4
Reticulotegmental nucleus
nTPM: 33.8
2325 Male, age 76, both hemispheres 36.6
2452 Male, age 74, both hemispheres 35.4
2322 Female, age 91, both hemispheres 32.8
2333 Male, age 80, both hemispheres 30.2
Spinal trigeminal nucleus, caudal
nTPM: 32.2
2447 Male, age 76, both hemispheres 37.1
2390 Female, age 91, both hemispheres 34.7
2642 Male, age 74, both hemispheres 33.5
2308 Male, age 80, both hemispheres 31.1
2312 Male, age 61, both hemispheres 24.5
Spinal trigeminal nucleus, interpolar
nTPM: 35.9
2066 Male, age 76, right hemisphere 46.3
2033 Male, age 80, both hemispheres 35.4
2386 Female, age 85, both hemispheres 35.3
2625 Male, age 61, both hemispheres 31.3
2389 Female, age 91, both hemispheres 31.1
Spinal trigeminal nucleus, oral
nTPM: 32.3
2737 Female, age 85, both hemispheres 34.3
1978 Male, age 76, both hemispheres 32.5
2164 Male, age 80, both hemispheres 30.1
Spinal vestibular nucleus
nTPM: 34.9
2780 Male, age 80, both hemispheres 39.0
2748 Male, age 76, both hemispheres 38.8
2186 Female, age 91, both hemispheres 34.4
2384 Male, age 74, both hemispheres 33.1
2806 Female, age 85, both hemispheres 32.1
2796 Male, age 61, both hemispheres 31.7
Subcoeruleus area
nTPM: 33.3
1958 Male, age 80, both hemispheres 35.1
2323 Female, age 91, left hemisphere 34.6
2451 Male, age 74, both hemispheres 34.1
2369 Female, age 85, left hemisphere 32.4
2089 Male, age 76, left hemisphere 30.4
Superior olive
nTPM: 32.3
1875 Female, age 85, both hemispheres 41.2
2020 Male, age 76, both hemispheres 38.6
2364 Male, age 74, right hemisphere 29.1
2329 Male, age 80, right hemisphere 27.4
2561 Female, age 91, both hemispheres 25.3
Superior vestibular nucleus
nTPM: 33.3
2015 Male, age 80, both hemispheres 34.5
2061 Male, age 76, both hemispheres 33.5
2383 Male, age 74, both hemispheres 32.0
Ventral medullary reticular nucleus
nTPM: 33.1
2060 Male, age 76, both hemispheres 36.2
2372 Male, age 61, both hemispheres 30.0
Ventral periolivary nuclei
nTPM: 31.3
2130 Female, age 85, both hemispheres 35.3
2023 Male, age 76, both hemispheres 34.0
2165 Male, age 80, both hemispheres 29.1
2794 Female, age 91, left hemisphere 26.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 36.1
2741 Female, age 85, both hemispheres 41.7
2302 Female, age 91, both hemispheres 38.8
1986 Male, age 76, both hemispheres 38.5
2180 Male, age 61, both hemispheres 31.1
2118 Male, age 80, both hemispheres 30.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 31.3
1959 Male, age 76, both hemispheres 37.0
2359 Male, age 61, both hemispheres 32.0
2456 Female, age 91, both hemispheres 30.7
2161 Male, age 80, both hemispheres 30.3
2449 Male, age 74, both hemispheres 29.3
2840 Female, age 85, both hemispheres 28.3

PONS AND MEDULLA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 44.0
FF:10165-103B3 76 years, female 49.6
FF:10182-103D2 60 years, female 38.3
Medulla oblongata
Scaled Tags Per Million: 45.2
FF:10038-101F2 18-64 years, mixed 51.0
FF:10155-103A2 76 years, female 47.3
FF:10174-103C3 60 years, female 37.3
Pons
Scaled Tags Per Million: 59.9
FF:10033-101E6 18-54 years, mixed 59.9

PONS AND MEDULLA - Pig RNA-seqi
Average nTPM 20.8
Pig sample Sample description nTPM
17.618.419.217.319.7024681012141618
 		Medulla oblongata
nTPM: 18.4
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.3
Sample A Female 17.7
Sample B Female 17.3
Sample C Male 19.7
Sample D Male 19.0
19.420.221.617.924.7024681012141618202224
 		Pons
nTPM: 20.8
Samples: 4

Max nTPM: 24.7
Min nTPM: 17.9
Sample A Female 24.7
Sample B Female 17.9
Sample C Male 19.9
Sample D Male 20.5

PONS AND MEDULLA - Mouse RNA-seqi
Average nTPM 32.6
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 32.6
Samples: 4

Max nTPM: 33.4
Min nTPM: 31.9
Sample A Male 32.3
Sample B Male 33.4
Sample C Female 32.9
Sample D Female 31.9

PONS AND MEDULLA - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 6.9
81600090 Antisense, RP_080108_02_D06, Mouse strain C57BL/6J (56 days, male) 12.9
68441460 Antisense, RP_041214_02_D05, Mouse strain C57BL/6J (56 days, male) 1.0
Pons
Expression energy: 7.4
81600090 Antisense, RP_080108_02_D06, Mouse strain C57BL/6J (56 days, male) 12.3
68441460 Antisense, RP_041214_02_D05, Mouse strain C57BL/6J (56 days, male) 2.5

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