MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.5 nTPM
HPA Brain:526.8 nTPM
GTEx:109.5 nTPM
FANTOM5:403.4 Scaled Tags Per Million
Pig:165.2 nTPM
Mouse:28.1 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 526.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 400.5
1830 Male, age 51, unknown 561.6
1833 Male, age 53, unknown 483.6
2586 Male, age 75, left hemisphere 435.6
2019 Male, age 18, unknown 419.6
2411 Female, age 72, unknown 415.4
1870 Female, age 42, unknown 405.1
2666 Male, age 74, left hemisphere 385.5
2828 Female, age 72, unknown 344.8
1827 Male, age 72, unknown 278.6
2219 Male, age 76, both hemispheres 275.0
Dorsal raphe nucleus
nTPM: 293.5
2750 Male, age 76, both hemispheres 515.4
2016 Female, age 72, unknown 338.8
1828 Male, age 53, unknown 274.0
2047 Male, age 72, unknown 193.1
2298 Female, age 72, unknown 146.3
Inferior colliculus
nTPM: 267.1
2849 Male, age 72, unknown 331.1
1848 Female, age 42, unknown 288.0
1890 Male, age 53, unknown 272.0
2097 Female, age 72, unknown 177.5
Median raphe nucleus
nTPM: 240.7
2220 Male, age 76, midline 240.7
Periaquaductal grey, anterior
nTPM: 264.7
2502 Female, age 75, unknown 299.0
1947 Male, age 18, unknown 274.5
1795 Male, age 51, unknown 220.7
Periaquaductal grey, dorsal
nTPM: 213.3
2464 Female, age 72, unknown 311.9
1831 Male, age 72, unknown 219.5
1840 Male, age 53, unknown 173.3
2850 Male, age 76, both hemispheres 148.5
Periaquaductal grey, lateral
nTPM: 209.7
2272 Male, age 74, both hemispheres 251.0
2053 Male, age 18, unknown 234.5
2140 Male, age 76, both hemispheres 143.7
Pretectal area
nTPM: 261.8
2316 Male, age 76, right hemisphere 394.0
2407 Male, age 75, both hemispheres 385.5
1815 Male, age 53, unknown 362.6
2825 Male, age 18, unknown 294.2
1817 Female, age 42, unknown 270.0
2007 Male, age 72, unknown 244.5
2273 Male, age 74, both hemispheres 221.9
2224 Female, age 72, unknown 207.4
2667 Female, age 75, unknown 168.5
1816 Male, age 51, unknown 168.1
1944 Female, age 72, unknown 162.7
Red nucleus
nTPM: 526.8
1865 Male, age 51, unknown 595.4
1904 Male, age 53, unknown 592.3
2503 Female, age 72, unknown 587.2
2227 Male, age 72, unknown 580.1
2823 Male, age 76, right hemisphere 576.9
2588 Male, age 74, left hemisphere 519.3
2769 Male, age 72, unknown 519.1
1821 Female, age 72, unknown 506.1
1954 Female, age 42, unknown 492.3
2785 Male, age 18, unknown 470.9
2725 Female, age 75, unknown 444.9
2584 Male, age 75, left hemisphere 436.6
Substantia nigra
nTPM: 318.1
2590 Female, age 75, unknown 414.3
2583 Male, age 75, right hemisphere 397.8
2699 Male, age 18, unknown 354.8
2665 Male, age 74, both hemispheres 342.8
1851 Male, age 51, unknown 339.2
2241 Male, age 72, unknown 294.8
1889 Female, age 72, unknown 294.0
2409 Female, age 72, unknown 279.9
1941 Male, age 53, unknown 249.0
1916 Female, age 42, unknown 214.7
Superior colliculus
nTPM: 351.2
1913 Female, age 42, unknown 481.3
1995 Male, age 72, unknown 474.5
2668 Female, age 75, unknown 389.6
1895 Male, age 76, right hemisphere 384.9
2587 Male, age 74, left hemisphere 384.1
1839 Male, age 51, unknown 370.4
2664 Male, age 75, both hemispheres 336.6
1796 Male, age 53, unknown 258.3
2261 Male, age 18, unknown 217.8
2087 Female, age 72, unknown 214.0
Ventral tegmental area
nTPM: 344.9
2223 Female, age 72, unknown 483.6
2410 Female, age 72, unknown 390.1
1942 Male, age 51, unknown 307.6
2218 Male, age 76, both hemispheres 301.7
2021 Male, age 53, unknown 301.6
1915 Female, age 42, unknown 285.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.5
Samples: 139

Max nTPM: 328.8
Min nTPM: 26.0
Std nTPM: 57.3
Median nTPM: 97.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 328.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 297.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 275.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 268.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 267.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 247.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 222.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 221.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 220.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 213.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 198.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 403.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 403.4
FF:10158-103A5 76 years, female 403.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 165.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 165.3
Samples: 4

Max nTPM: 256.1
Min nTPM: 124.4
Sample A Female 146.5
Sample B Female 124.4
Sample C Male 134.1
Sample D Male 256.1
Midbrain
nTPM: 159.7
Samples: 4

Max nTPM: 278.4
Min nTPM: 89.7
Sample A Female 278.4
Sample B Female 177.2
Sample C Male 89.7
Sample D Male 93.3
Periaqueductal gray
nTPM: 120.6
Samples: 3

Max nTPM: 137.6
Min nTPM: 96.5
Sample B Female 137.6
Sample C Male 96.5
Sample D Male 127.6
Superior colliculi
nTPM: 120.5
Samples: 4

Max nTPM: 161.3
Min nTPM: 62.7
Sample A Female 127.5
Sample B Female 62.7
Sample C Male 130.3
Sample D Male 161.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 30.6
Min nTPM: 26.2
Sample A Male 26.4
Sample B Male 26.2
Sample C Female 29.1
Sample D Female 30.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
68844468 Antisense, RP_050222_01_F10, Mouse strain C57BL/6J (56 days, male) 5.9
71924066 Antisense, RP_051017_02_H07, Mouse strain C57BL/6J (56 days, male) 4.2

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