MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.5 nTPM
HPA Brain:28.3 nTPM
GTEx:49.5 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:8.4 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.5
2219 Male, age 76, both hemispheres 26.1
2586 Male, age 75, left hemisphere 26.0
2411 Female, age 72, unknown 24.9
2666 Male, age 74, left hemisphere 23.7
2828 Female, age 72, unknown 22.7
1827 Male, age 72, unknown 22.1
1870 Female, age 42, unknown 21.0
1830 Male, age 51, unknown 20.3
2019 Male, age 18, unknown 20.0
1833 Male, age 53, unknown 18.4
Dorsal raphe nucleus
nTPM: 21.9
2298 Female, age 72, unknown 24.2
1828 Male, age 53, unknown 22.6
2047 Male, age 72, unknown 21.7
2750 Male, age 76, both hemispheres 20.6
2016 Female, age 72, unknown 20.3
Inferior colliculus
nTPM: 20.0
1848 Female, age 42, unknown 21.5
2097 Female, age 72, unknown 21.4
1890 Male, age 53, unknown 19.5
2849 Male, age 72, unknown 17.7
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Periaquaductal grey, anterior
nTPM: 28.3
1947 Male, age 18, unknown 35.2
2502 Female, age 75, unknown 27.2
1795 Male, age 51, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 19.2
1840 Male, age 53, unknown 21.9
2850 Male, age 76, both hemispheres 19.8
1831 Male, age 72, unknown 18.2
2464 Female, age 72, unknown 16.7
Periaquaductal grey, lateral
nTPM: 17.0
2140 Male, age 76, both hemispheres 18.4
2053 Male, age 18, unknown 17.7
2272 Male, age 74, both hemispheres 15.0
Pretectal area
nTPM: 20.8
2007 Male, age 72, unknown 26.0
1816 Male, age 51, unknown 24.9
1817 Female, age 42, unknown 24.0
2316 Male, age 76, right hemisphere 22.3
1944 Female, age 72, unknown 21.7
2667 Female, age 75, unknown 19.7
2825 Male, age 18, unknown 19.6
1815 Male, age 53, unknown 18.8
2224 Female, age 72, unknown 18.8
2273 Male, age 74, both hemispheres 17.5
2407 Male, age 75, both hemispheres 15.2
Red nucleus
nTPM: 22.8
2725 Female, age 75, unknown 27.2
1821 Female, age 72, unknown 26.5
2227 Male, age 72, unknown 24.3
2769 Male, age 72, unknown 23.6
2588 Male, age 74, left hemisphere 23.3
1865 Male, age 51, unknown 23.1
2503 Female, age 72, unknown 22.5
1904 Male, age 53, unknown 21.6
1954 Female, age 42, unknown 21.5
2823 Male, age 76, right hemisphere 21.2
2785 Male, age 18, unknown 20.8
2584 Male, age 75, left hemisphere 18.0
Substantia nigra
nTPM: 24.6
1916 Female, age 42, unknown 35.2
1851 Male, age 51, unknown 32.5
1941 Male, age 53, unknown 29.0
2665 Male, age 74, both hemispheres 25.3
2409 Female, age 72, unknown 23.4
2699 Male, age 18, unknown 22.9
1889 Female, age 72, unknown 22.1
2241 Male, age 72, unknown 21.1
2583 Male, age 75, right hemisphere 18.0
2590 Female, age 75, unknown 16.2
Superior colliculus
nTPM: 21.0
2668 Female, age 75, unknown 27.2
1796 Male, age 53, unknown 21.9
2587 Male, age 74, left hemisphere 21.4
2261 Male, age 18, unknown 21.1
1895 Male, age 76, right hemisphere 20.9
1995 Male, age 72, unknown 20.2
2664 Male, age 75, both hemispheres 19.6
2087 Female, age 72, unknown 19.5
1913 Female, age 42, unknown 19.1
1839 Male, age 51, unknown 18.7
Ventral tegmental area
nTPM: 24.8
1915 Female, age 42, unknown 29.6
2410 Female, age 72, unknown 28.1
2218 Male, age 76, both hemispheres 23.8
2021 Male, age 53, unknown 23.2
1942 Male, age 51, unknown 22.5
2223 Female, age 72, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.5
Samples: 139

Max nTPM: 95.9
Min nTPM: 23.6
Std nTPM: 12.9
Median nTPM: 47.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 94.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 90.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 81.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 74.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 73.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 70.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 68.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.4
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.3
Sample A Female 9.1
Sample B Female 8.9
Sample C Male 8.3
Sample D Male 7.3
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 11.1
Min nTPM: 5.4
Sample A Female 11.1
Sample B Female 8.1
Sample C Male 8.2
Sample D Male 5.4
Periaqueductal gray
nTPM: 7.1
Samples: 3

Max nTPM: 8.1
Min nTPM: 6.2
Sample B Female 6.9
Sample C Male 8.1
Sample D Male 6.2
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.5
Sample A Female 8.2
Sample B Female 8.5
Sample C Male 7.7
Sample D Male 6.5

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