MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.1 nTPM
HPA Brain:34.0 nTPM
GTEx:44.1 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:17.1 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
2586 Male, age 75, left hemisphere 46.2
2019 Male, age 18, unknown 40.6
2828 Female, age 72, unknown 36.4
2411 Female, age 72, unknown 34.0
1827 Male, age 72, unknown 33.9
2666 Male, age 74, left hemisphere 30.7
1830 Male, age 51, unknown 28.2
1833 Male, age 53, unknown 27.6
1870 Female, age 42, unknown 27.3
2219 Male, age 76, both hemispheres 25.7
Dorsal raphe nucleus
nTPM: 28.9
2750 Male, age 76, both hemispheres 31.3
2047 Male, age 72, unknown 30.1
1828 Male, age 53, unknown 28.9
2298 Female, age 72, unknown 28.8
2016 Female, age 72, unknown 25.4
Inferior colliculus
nTPM: 27.9
1890 Male, age 53, unknown 32.7
2097 Female, age 72, unknown 27.6
1848 Female, age 42, unknown 26.2
2849 Male, age 72, unknown 24.9
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Periaquaductal grey, anterior
nTPM: 31.8
1795 Male, age 51, unknown 33.7
1947 Male, age 18, unknown 31.3
2502 Female, age 75, unknown 30.3
Periaquaductal grey, dorsal
nTPM: 25.2
1831 Male, age 72, unknown 30.2
2464 Female, age 72, unknown 26.0
2850 Male, age 76, both hemispheres 24.1
1840 Male, age 53, unknown 20.6
Periaquaductal grey, lateral
nTPM: 27.3
2140 Male, age 76, both hemispheres 28.7
2272 Male, age 74, both hemispheres 27.8
2053 Male, age 18, unknown 25.6
Pretectal area
nTPM: 32.7
2007 Male, age 72, unknown 43.4
1817 Female, age 42, unknown 36.3
1816 Male, age 51, unknown 36.1
1815 Male, age 53, unknown 35.2
2407 Male, age 75, both hemispheres 35.0
1944 Female, age 72, unknown 34.7
2316 Male, age 76, right hemisphere 34.0
2667 Female, age 75, unknown 29.3
2273 Male, age 74, both hemispheres 26.2
2224 Female, age 72, unknown 25.1
2825 Male, age 18, unknown 24.5
Red nucleus
nTPM: 34.0
2584 Male, age 75, left hemisphere 45.9
2785 Male, age 18, unknown 42.3
2588 Male, age 74, left hemisphere 36.9
1865 Male, age 51, unknown 35.5
2823 Male, age 76, right hemisphere 34.0
2227 Male, age 72, unknown 33.0
2503 Female, age 72, unknown 32.4
1904 Male, age 53, unknown 32.3
2769 Male, age 72, unknown 31.4
2725 Female, age 75, unknown 30.0
1954 Female, age 42, unknown 27.3
1821 Female, age 72, unknown 26.8
Substantia nigra
nTPM: 31.2
2583 Male, age 75, right hemisphere 39.2
2665 Male, age 74, both hemispheres 35.5
2590 Female, age 75, unknown 35.3
1851 Male, age 51, unknown 33.7
1889 Female, age 72, unknown 33.1
1941 Male, age 53, unknown 32.1
1916 Female, age 42, unknown 32.0
2699 Male, age 18, unknown 25.7
2409 Female, age 72, unknown 25.3
2241 Male, age 72, unknown 20.6
Superior colliculus
nTPM: 31.8
2664 Male, age 75, both hemispheres 36.6
2668 Female, age 75, unknown 35.5
2261 Male, age 18, unknown 34.0
1796 Male, age 53, unknown 33.6
1913 Female, age 42, unknown 32.8
1995 Male, age 72, unknown 32.1
2087 Female, age 72, unknown 31.2
1895 Male, age 76, right hemisphere 31.0
1839 Male, age 51, unknown 27.1
2587 Male, age 74, left hemisphere 23.9
Ventral tegmental area
nTPM: 29.0
2021 Male, age 53, unknown 30.0
1915 Female, age 42, unknown 29.9
2410 Female, age 72, unknown 29.4
2218 Male, age 76, both hemispheres 28.9
1942 Male, age 51, unknown 28.3
2223 Female, age 72, unknown 27.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.1
Samples: 139

Max nTPM: 76.7
Min nTPM: 28.4
Std nTPM: 9.4
Median nTPM: 42.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 76.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 74.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 65.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 64.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 61.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 61.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 61.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 59.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 58.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.2
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.0
Sample A Female 9.5
Sample B Female 8.4
Sample C Male 8.0
Sample D Male 7.0
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 12.0
Min nTPM: 6.5
Sample A Female 8.7
Sample B Female 6.5
Sample C Male 12.0
Sample D Male 9.8
Periaqueductal gray
nTPM: 6.8
Samples: 3

Max nTPM: 8.2
Min nTPM: 5.7
Sample B Female 6.4
Sample C Male 8.2
Sample D Male 5.7
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.8
Sample A Female 11.4
Sample B Female 12.8
Sample C Male 13.5
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 19.6
Min nTPM: 15.2
Sample A Male 17.0
Sample B Male 15.2
Sample C Female 16.9
Sample D Female 19.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68341884 Antisense, RP_041207_02_D04, Mouse strain C57BL/6J (56 days, male) 2.4

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