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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
167.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 167.1
Samples: 152
Max nTPM: 419.7
Min nTPM: 55.6
Std nTPM: 79.7
Median nTPM: 151.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
419.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
396.9
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
385.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
378.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
372.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
349.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
348.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
344.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
324.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
286.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
285.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
284.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
281.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
268.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
265.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
263.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
263.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
260.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
256.4
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
254.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
253.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
252.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
251.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
249.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
246.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
245.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
245.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
243.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
242.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
239.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
238.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
236.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
232.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
231.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
231.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
226.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
222.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
221.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
220.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
218.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
217.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
213.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
211.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
211.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
209.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
201.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
198.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
196.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
193.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
192.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
192.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
190.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
185.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
185.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
184.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
177.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
175.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
174.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
174.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
173.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
173.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
173.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
171.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
170.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
170.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
168.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
163.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
162.1
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
160.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
158.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
158.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
157.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
157.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
157.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
155.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
151.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
151.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
149.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
149.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
148.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
148.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
147.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
145.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
142.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
141.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
140.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
138.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
136.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
136.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
133.8
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
132.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
130.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
127.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
126.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
125.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
125.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
121.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
120.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
119.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
118.7
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
118.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
118.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
117.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
114.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
111.9
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
111.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
109.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
108.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
107.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
105.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
105.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
105.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
102.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
100.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
99.5
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
96.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
96.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
95.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
92.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
92.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
92.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
92.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
89.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
89.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
89.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
88.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
88.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
87.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
87.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
86.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
85.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
84.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
84.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
84.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
84.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
82.8
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
80.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
79.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
78.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
76.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
76.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
76.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
73.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
72.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
69.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
69.4
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
68.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
67.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
66.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
57.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
57.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
55.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
556.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 556.4
Samples: 4
Max nTPM: 598.9
Min nTPM: 532.2
Sample A
Male
598.9
Sample B
Male
539.1
Sample C
Female
555.4
Sample D
Female
532.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
