MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:155.3 nTPM
HPA Brain:398.8 nTPM
GTEx:155.3 nTPM
FANTOM5:138.5 Scaled Tags Per Million
Pig:344.0 nTPM
Mouse:444.8 nTPM
Allen mouse:18.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 398.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 306.0
2666 Male, age 74, left hemisphere 398.0
1827 Male, age 72, unknown 373.4
2411 Female, age 72, unknown 335.5
2019 Male, age 18, unknown 316.8
2219 Male, age 76, both hemispheres 307.7
2586 Male, age 75, left hemisphere 287.5
2828 Female, age 72, unknown 275.0
1870 Female, age 42, unknown 274.1
1833 Male, age 53, unknown 254.4
1830 Male, age 51, unknown 237.6
Dorsal raphe nucleus
nTPM: 323.6
2298 Female, age 72, unknown 403.6
2047 Male, age 72, unknown 364.2
1828 Male, age 53, unknown 329.6
2750 Male, age 76, both hemispheres 325.6
2016 Female, age 72, unknown 194.7
Inferior colliculus
nTPM: 276.1
2097 Female, age 72, unknown 340.0
1848 Female, age 42, unknown 281.9
2849 Male, age 72, unknown 242.1
1890 Male, age 53, unknown 240.3
Median raphe nucleus
nTPM: 385.7
2220 Male, age 76, midline 385.7
Periaquaductal grey, anterior
nTPM: 341.6
1947 Male, age 18, unknown 383.8
1795 Male, age 51, unknown 347.4
2502 Female, age 75, unknown 293.5
Periaquaductal grey, dorsal
nTPM: 237.0
1840 Male, age 53, unknown 264.5
1831 Male, age 72, unknown 244.6
2464 Female, age 72, unknown 220.9
2850 Male, age 76, both hemispheres 218.0
Periaquaductal grey, lateral
nTPM: 215.7
2053 Male, age 18, unknown 237.7
2272 Male, age 74, both hemispheres 214.6
2140 Male, age 76, both hemispheres 194.8
Pretectal area
nTPM: 335.8
1816 Male, age 51, unknown 488.4
1944 Female, age 72, unknown 474.0
2007 Male, age 72, unknown 459.0
1817 Female, age 42, unknown 435.8
1815 Male, age 53, unknown 360.1
2224 Female, age 72, unknown 305.5
2667 Female, age 75, unknown 275.0
2825 Male, age 18, unknown 256.2
2407 Male, age 75, both hemispheres 243.3
2316 Male, age 76, right hemisphere 207.9
2273 Male, age 74, both hemispheres 188.7
Red nucleus
nTPM: 252.9
1821 Female, age 72, unknown 329.3
2725 Female, age 75, unknown 303.5
2584 Male, age 75, left hemisphere 292.0
2785 Male, age 18, unknown 277.0
2588 Male, age 74, left hemisphere 271.9
1954 Female, age 42, unknown 254.0
2823 Male, age 76, right hemisphere 223.6
2227 Male, age 72, unknown 218.3
2769 Male, age 72, unknown 217.7
1865 Male, age 51, unknown 217.3
1904 Male, age 53, unknown 216.2
2503 Female, age 72, unknown 214.3
Substantia nigra
nTPM: 398.8
1916 Female, age 42, unknown 557.0
1941 Male, age 53, unknown 537.0
1889 Female, age 72, unknown 441.4
1851 Male, age 51, unknown 428.9
2241 Male, age 72, unknown 413.0
2665 Male, age 74, both hemispheres 380.8
2409 Female, age 72, unknown 373.4
2590 Female, age 75, unknown 288.3
2699 Male, age 18, unknown 288.1
2583 Male, age 75, right hemisphere 280.4
Superior colliculus
nTPM: 289.7
2668 Female, age 75, unknown 417.3
2087 Female, age 72, unknown 382.9
1796 Male, age 53, unknown 324.2
2261 Male, age 18, unknown 324.1
1895 Male, age 76, right hemisphere 316.0
1839 Male, age 51, unknown 266.4
2587 Male, age 74, left hemisphere 236.8
2664 Male, age 75, both hemispheres 228.9
1913 Female, age 42, unknown 216.7
1995 Male, age 72, unknown 183.4
Ventral tegmental area
nTPM: 338.2
2218 Male, age 76, both hemispheres 421.3
2410 Female, age 72, unknown 421.1
1915 Female, age 42, unknown 390.2
1942 Male, age 51, unknown 293.4
2223 Female, age 72, unknown 260.5
2021 Male, age 53, unknown 242.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 155.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.3
Samples: 139

Max nTPM: 754.2
Min nTPM: 37.4
Std nTPM: 115.8
Median nTPM: 112.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 754.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 696.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 498.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 486.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 391.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 382.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 366.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 355.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 344.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 306.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 306.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.5
FF:10158-103A5 76 years, female 138.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 344.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 295.3
Samples: 4

Max nTPM: 444.4
Min nTPM: 117.5
Sample A Female 444.4
Sample B Female 210.9
Sample C Male 408.4
Sample D Male 117.5
Midbrain
nTPM: 324.0
Samples: 4

Max nTPM: 552.4
Min nTPM: 139.5
Sample A Female 139.5
Sample B Female 233.8
Sample C Male 552.4
Sample D Male 370.1
Periaqueductal gray
nTPM: 237.5
Samples: 3

Max nTPM: 307.9
Min nTPM: 194.8
Sample B Female 209.9
Sample C Male 307.9
Sample D Male 194.8
Superior colliculi
nTPM: 344.0
Samples: 4

Max nTPM: 527.2
Min nTPM: 165.3
Sample A Female 362.8
Sample B Female 165.3
Sample C Male 527.2
Sample D Male 320.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 444.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 444.8
Samples: 4

Max nTPM: 452.1
Min nTPM: 434.0
Sample A Male 434.0
Sample B Male 444.4
Sample C Female 448.7
Sample D Female 452.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.0
68443009 Antisense, RP_050111_01_B11, Mouse strain C57BL/6J (56 days, male) 23.1
1124 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 12.8
1125 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 9.5

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