MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.4 nTPM
HPA Brain:67.4 nTPM
GTEx:44.4 nTPM
FANTOM5:196.6 Scaled Tags Per Million
Pig:182.3 nTPM
Mouse:104.9 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.4
1870 Female, age 42, unknown 74.9
2586 Male, age 75, left hemisphere 70.2
2411 Female, age 72, unknown 64.0
1833 Male, age 53, unknown 63.7
1830 Male, age 51, unknown 61.5
2019 Male, age 18, unknown 60.8
2666 Male, age 74, left hemisphere 58.2
2828 Female, age 72, unknown 56.5
1827 Male, age 72, unknown 54.4
2219 Male, age 76, both hemispheres 40.2
Dorsal raphe nucleus
nTPM: 64.1
2016 Female, age 72, unknown 75.4
1828 Male, age 53, unknown 64.0
2750 Male, age 76, both hemispheres 63.0
2298 Female, age 72, unknown 60.6
2047 Male, age 72, unknown 57.4
Inferior colliculus
nTPM: 59.7
2097 Female, age 72, unknown 64.2
1890 Male, age 53, unknown 59.3
1848 Female, age 42, unknown 59.0
2849 Male, age 72, unknown 56.5
Median raphe nucleus
nTPM: 59.2
2220 Male, age 76, midline 59.2
Periaquaductal grey, anterior
nTPM: 61.6
2502 Female, age 75, unknown 66.9
1947 Male, age 18, unknown 60.9
1795 Male, age 51, unknown 57.0
Periaquaductal grey, dorsal
nTPM: 67.4
2850 Male, age 76, both hemispheres 76.8
1840 Male, age 53, unknown 69.1
1831 Male, age 72, unknown 63.6
2464 Female, age 72, unknown 60.1
Periaquaductal grey, lateral
nTPM: 61.7
2140 Male, age 76, both hemispheres 68.1
2053 Male, age 18, unknown 61.4
2272 Male, age 74, both hemispheres 55.7
Pretectal area
nTPM: 58.6
2273 Male, age 74, both hemispheres 66.2
2825 Male, age 18, unknown 65.3
2224 Female, age 72, unknown 63.7
1815 Male, age 53, unknown 60.4
2407 Male, age 75, both hemispheres 59.3
2667 Female, age 75, unknown 58.3
2316 Male, age 76, right hemisphere 57.7
1817 Female, age 42, unknown 55.6
1944 Female, age 72, unknown 53.9
1816 Male, age 51, unknown 53.8
2007 Male, age 72, unknown 50.0
Red nucleus
nTPM: 64.5
1821 Female, age 72, unknown 74.8
1954 Female, age 42, unknown 71.1
1904 Male, age 53, unknown 69.8
1865 Male, age 51, unknown 68.9
2584 Male, age 75, left hemisphere 68.0
2227 Male, age 72, unknown 65.0
2769 Male, age 72, unknown 64.5
2823 Male, age 76, right hemisphere 63.0
2503 Female, age 72, unknown 62.0
2785 Male, age 18, unknown 58.8
2725 Female, age 75, unknown 58.7
2588 Male, age 74, left hemisphere 49.9
Substantia nigra
nTPM: 63.1
2241 Male, age 72, unknown 78.3
2590 Female, age 75, unknown 68.9
2409 Female, age 72, unknown 67.6
2699 Male, age 18, unknown 65.4
1851 Male, age 51, unknown 64.1
2583 Male, age 75, right hemisphere 61.5
1941 Male, age 53, unknown 56.8
1889 Female, age 72, unknown 56.6
2665 Male, age 74, both hemispheres 56.3
1916 Female, age 42, unknown 56.0
Superior colliculus
nTPM: 61.8
1995 Male, age 72, unknown 76.6
1913 Female, age 42, unknown 75.7
2664 Male, age 75, both hemispheres 66.4
2587 Male, age 74, left hemisphere 64.1
1839 Male, age 51, unknown 63.9
2261 Male, age 18, unknown 57.0
2668 Female, age 75, unknown 56.1
2087 Female, age 72, unknown 54.9
1895 Male, age 76, right hemisphere 52.0
1796 Male, age 53, unknown 51.3
Ventral tegmental area
nTPM: 61.9
2021 Male, age 53, unknown 66.2
2223 Female, age 72, unknown 65.0
1942 Male, age 51, unknown 61.3
1915 Female, age 42, unknown 61.0
2410 Female, age 72, unknown 59.7
2218 Male, age 76, both hemispheres 57.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.4
Samples: 139

Max nTPM: 73.9
Min nTPM: 28.2
Std nTPM: 9.8
Median nTPM: 42.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 66.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 65.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 64.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 63.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 63.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 61.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 61.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 61.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.6
FF:10158-103A5 76 years, female 196.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 182.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 163.2
Samples: 4

Max nTPM: 186.1
Min nTPM: 141.6
Sample A Female 176.7
Sample B Female 148.4
Sample C Male 141.6
Sample D Male 186.1
Midbrain
nTPM: 182.3
Samples: 4

Max nTPM: 306.1
Min nTPM: 121.8
Sample A Female 306.1
Sample B Female 171.6
Sample C Male 129.7
Sample D Male 121.8
Periaqueductal gray
nTPM: 139.3
Samples: 3

Max nTPM: 152.1
Min nTPM: 129.8
Sample B Female 152.1
Sample C Male 129.8
Sample D Male 135.9
Superior colliculi
nTPM: 154.3
Samples: 4

Max nTPM: 161.5
Min nTPM: 148.5
Sample A Female 161.5
Sample B Female 148.5
Sample C Male 157.2
Sample D Male 150.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.9
Samples: 4

Max nTPM: 110.3
Min nTPM: 97.6
Sample A Male 110.3
Sample B Male 105.9
Sample C Female 97.6
Sample D Female 105.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
68910987 Antisense, RP_050203_01_G02, Mouse strain C57BL/6J (56 days, male) 9.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org