MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:194.0 nTPM
HPA Brain:213.4 nTPM
GTEx:194.0 nTPM
FANTOM5:162.0 Scaled Tags Per Million
Mouse:311.1 nTPM
Allen mouse:13.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 213.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 170.1
1827 Male, age 72, unknown 209.7
2411 Female, age 72, unknown 202.4
1870 Female, age 42, unknown 172.9
2019 Male, age 18, unknown 170.2
2666 Male, age 74, left hemisphere 162.3
2586 Male, age 75, left hemisphere 161.4
2219 Male, age 76, both hemispheres 160.4
1833 Male, age 53, unknown 158.0
2828 Female, age 72, unknown 157.1
1830 Male, age 51, unknown 146.9
Dorsal raphe nucleus
nTPM: 198.1
2298 Female, age 72, unknown 245.0
2047 Male, age 72, unknown 218.6
1828 Male, age 53, unknown 182.3
2750 Male, age 76, both hemispheres 179.1
2016 Female, age 72, unknown 165.4
Inferior colliculus
nTPM: 175.8
2097 Female, age 72, unknown 212.5
1848 Female, age 42, unknown 177.6
1890 Male, age 53, unknown 159.1
2849 Male, age 72, unknown 154.2
Median raphe nucleus
nTPM: 213.4
2220 Male, age 76, midline 213.4
Periaquaductal grey, anterior
nTPM: 187.7
1947 Male, age 18, unknown 206.1
1795 Male, age 51, unknown 180.1
2502 Female, age 75, unknown 177.0
Periaquaductal grey, dorsal
nTPM: 167.4
1840 Male, age 53, unknown 188.4
2850 Male, age 76, both hemispheres 164.0
2464 Female, age 72, unknown 163.7
1831 Male, age 72, unknown 153.4
Periaquaductal grey, lateral
nTPM: 152.7
2272 Male, age 74, both hemispheres 158.2
2053 Male, age 18, unknown 154.6
2140 Male, age 76, both hemispheres 145.2
Pretectal area
nTPM: 190.9
1816 Male, age 51, unknown 229.0
1817 Female, age 42, unknown 221.4
2007 Male, age 72, unknown 216.3
1944 Female, age 72, unknown 213.0
2224 Female, age 72, unknown 211.6
1815 Male, age 53, unknown 199.7
2667 Female, age 75, unknown 188.8
2273 Male, age 74, both hemispheres 187.8
2825 Male, age 18, unknown 159.0
2407 Male, age 75, both hemispheres 139.5
2316 Male, age 76, right hemisphere 134.0
Red nucleus
nTPM: 144.1
1821 Female, age 72, unknown 184.9
2725 Female, age 75, unknown 172.4
2785 Male, age 18, unknown 158.3
2503 Female, age 72, unknown 152.2
1954 Female, age 42, unknown 145.2
2588 Male, age 74, left hemisphere 138.3
2584 Male, age 75, left hemisphere 135.4
2823 Male, age 76, right hemisphere 133.4
1904 Male, age 53, unknown 130.6
1865 Male, age 51, unknown 130.4
2227 Male, age 72, unknown 124.7
2769 Male, age 72, unknown 123.7
Substantia nigra
nTPM: 200.4
2241 Male, age 72, unknown 254.4
1916 Female, age 42, unknown 248.9
1941 Male, age 53, unknown 227.0
1889 Female, age 72, unknown 221.0
1851 Male, age 51, unknown 214.6
2409 Female, age 72, unknown 188.8
2699 Male, age 18, unknown 171.3
2590 Female, age 75, unknown 165.6
2665 Male, age 74, both hemispheres 159.2
2583 Male, age 75, right hemisphere 153.0
Superior colliculus
nTPM: 163.8
1796 Male, age 53, unknown 194.5
2087 Female, age 72, unknown 187.5
2261 Male, age 18, unknown 178.3
2668 Female, age 75, unknown 169.4
2587 Male, age 74, left hemisphere 162.9
1895 Male, age 76, right hemisphere 162.6
1839 Male, age 51, unknown 161.9
2664 Male, age 75, both hemispheres 154.1
1913 Female, age 42, unknown 137.1
1995 Male, age 72, unknown 129.2
Ventral tegmental area
nTPM: 187.7
2410 Female, age 72, unknown 213.8
1915 Female, age 42, unknown 213.4
2218 Male, age 76, both hemispheres 186.0
1942 Male, age 51, unknown 185.5
2223 Female, age 72, unknown 171.3
2021 Male, age 53, unknown 156.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 194.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 194.0
Samples: 139

Max nTPM: 391.9
Min nTPM: 91.2
Std nTPM: 61.4
Median nTPM: 185.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 391.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 375.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 357.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 345.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 324.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 322.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 314.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 309.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 309.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 301.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 300.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.0
FF:10158-103A5 76 years, female 162.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 311.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 311.1
Samples: 4

Max nTPM: 315.7
Min nTPM: 301.2
Sample A Male 301.2
Sample B Male 312.3
Sample C Female 315.7
Sample D Female 315.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
69526874 Antisense, RP_050421_01_G10, Mouse strain C57BL/6J (56 days, male) 13.2

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