HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:22.6 nTPM
GTEx:3.7 nTPM
FANTOM5:23.8 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:9.9 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030060Antibody HPA030061
Glial cells LowNot detected
Neuronal cells MediumHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.6
Sample id Sample description nTPM
Hippocampus
nTPM: 18.5
1911 Female, age 85, right hemisphere 21.1
2621 Female, age 67, right hemisphere 19.0
1855 Male, age 76, left hemisphere 18.9
2148 Female, age 91, left hemisphere 18.8
2529 Female, age 94, left hemisphere 17.4
1898 Male, age 80, left hemisphere 15.6
Dentate gyrus
nTPM: 19.2
2531 Female, age 67, both hemispheres 22.6
2530 Female, age 94, left hemisphere 20.7
2010 Male, age 76, both hemispheres 19.6
2246 Female, age 85, both hemispheres 18.6
1927 Female, age 91, both hemispheres 18.2
2528 Male, age 74, both hemispheres 15.7
Entorhinal gyrus
nTPM: 22.6
2613 Female, age 94, left hemisphere 34.3
2764 Male, age 80, right hemisphere 22.5
1787 Male, age 76, left hemisphere 21.5
2686 Male, age 75, right hemisphere 21.0
1938 Female, age 85, left hemisphere 19.2
2117 Female, age 91, right hemisphere 16.9
Hippocampus, CA1
nTPM: 17.7
2749 Male, age 80, left hemisphere 20.0
2045 Male, age 76, both hemispheres 18.8
2082 Female, age 91, right hemisphere 18.7
1873 Female, age 85, both hemispheres 15.7
2527 Male, age 74, both hemispheres 15.3
Hippocampus, CA2
nTPM: 17.7
2437 Female, age 94, left hemisphere 18.9
1940 Female, age 85, left hemisphere 18.8
2113 Female, age 91, right hemisphere 18.6
1963 Male, age 80, left hemisphere 18.0
2249 Male, age 74, both hemispheres 15.9
1892 Male, age 76, both hemispheres 15.7
Hippocampus, CA3
nTPM: 20.6
2137 Male, age 80, left hemisphere 25.2
2620 Female, age 94, left hemisphere 24.5
2861 Female, age 67, both hemispheres 20.6
1891 Female, age 85, both hemispheres 20.1
1867 Male, age 76, both hemispheres 16.7
2436 Male, age 74, both hemispheres 16.7
Parahippocampal cortex
nTPM: 19.8
2693 Female, age 94, both hemispheres 22.8
2532 Female, age 72, left hemisphere 22.3
2018 Male, age 76, both hemispheres 21.6
2245 Female, age 91, both hemispheres 20.9
1850 Male, age 80, both hemispheres 20.4
1933 Female, age 85, both hemispheres 19.6
1990 Female, age 91, right hemisphere 19.1
2622 Female, age 67, right hemisphere 18.3
2692 Male, age 74, both hemispheres 17.5
2250 Female, age 67, right hemisphere 15.4
Perirhinal gyrus
nTPM: 19.4
2848 Male, age 76, right hemisphere 21.8
1841 Female, age 85, right hemisphere 20.3
2521 Female, age 94, right hemisphere 19.8
1794 Male, age 80, right hemisphere 18.7
1847 Female, age 91, left hemisphere 16.5
Subiculum
nTPM: 19.4
2042 Male, age 76, both hemispheres 25.3
1901 Male, age 80, both hemispheres 22.0
2729 Female, age 91, right hemisphere 19.1
1977 Female, age 85, both hemispheres 18.8
2438 Female, age 94, left hemisphere 16.4
2619 Male, age 74, both hemispheres 15.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3.7
Samples: 197

Max nTPM: 8.9
Min nTPM: 1.2
Std nTPM: 1.4
Median nTPM: 3.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 8.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 8.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 8.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 7.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 7.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 7.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 7.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 7.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 7.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 6.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 6.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.8
FF:10169-103B7 60 years, female 27.0
FF:10153-102I9 76 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.4
Pig sample Sample description nTPM
Subiculum
nTPM: 13.3
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.2
Sample A Female 12.4
Sample B Female 16.1
Sample C Male 12.2
Sample D Male 12.5
Dorsal hippocampus
nTPM: 14.4
Samples: 4

Max nTPM: 17.2
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 15.2
Sample C Male 17.2
Sample D Male 13.3
Entorhinal cortex
nTPM: 12.2
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.2
Sample A Female 12.3
Sample B Female 11.2
Sample C Male 11.3
Sample D Male 14.1
Ventral hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 14.6
Min nTPM: 12.6
Sample A Female 12.6
Sample B Female 14.6
Sample C Male 13.5
Sample D Male 13.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.0
Samples: 4

Max nTPM: 11.4
Min nTPM: 8.8
Sample A Male 11.4
Sample B Male 10.7
Sample C Female 8.8
Sample D Female 8.9
Hippocampal formation
nTPM: 6.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.3
Sample A Male 8.2
Sample B Male 6.6
Sample C Female 5.3
Sample D Female 6.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
71211671 Antisense, RP_050816_02_B04, Mouse strain C57BL/6J (56 days, male) 0.8

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