MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA Brain:28.0 nTPM
GTEx:5.5 nTPM
FANTOM5:50.9 Scaled Tags Per Million
Pig:16.3 nTPM
Mouse:8.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.6
1870 Female, age 42, unknown 28.6
1830 Male, age 51, unknown 28.0
2411 Female, age 72, unknown 27.4
1833 Male, age 53, unknown 26.3
2666 Male, age 74, left hemisphere 25.1
2586 Male, age 75, left hemisphere 25.0
2019 Male, age 18, unknown 23.2
2828 Female, age 72, unknown 21.1
2219 Male, age 76, both hemispheres 20.8
1827 Male, age 72, unknown 20.4
Dorsal raphe nucleus
nTPM: 19.9
2750 Male, age 76, both hemispheres 27.9
1828 Male, age 53, unknown 19.0
2047 Male, age 72, unknown 18.2
2016 Female, age 72, unknown 17.9
2298 Female, age 72, unknown 16.3
Inferior colliculus
nTPM: 21.1
1890 Male, age 53, unknown 21.8
2097 Female, age 72, unknown 21.8
2849 Male, age 72, unknown 20.8
1848 Female, age 42, unknown 19.8
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Periaquaductal grey, anterior
nTPM: 19.5
1947 Male, age 18, unknown 20.6
1795 Male, age 51, unknown 19.4
2502 Female, age 75, unknown 18.4
Periaquaductal grey, dorsal
nTPM: 17.9
1831 Male, age 72, unknown 20.3
2464 Female, age 72, unknown 18.8
2850 Male, age 76, both hemispheres 17.9
1840 Male, age 53, unknown 14.5
Periaquaductal grey, lateral
nTPM: 18.7
2053 Male, age 18, unknown 21.3
2140 Male, age 76, both hemispheres 18.7
2272 Male, age 74, both hemispheres 16.0
Pretectal area
nTPM: 18.6
2407 Male, age 75, both hemispheres 23.0
2316 Male, age 76, right hemisphere 22.1
2825 Male, age 18, unknown 21.8
2667 Female, age 75, unknown 21.3
1815 Male, age 53, unknown 20.3
2224 Female, age 72, unknown 17.5
2007 Male, age 72, unknown 17.2
1817 Female, age 42, unknown 16.6
2273 Male, age 74, both hemispheres 15.7
1816 Male, age 51, unknown 14.5
1944 Female, age 72, unknown 14.4
Red nucleus
nTPM: 28.0
2584 Male, age 75, left hemisphere 36.5
2588 Male, age 74, left hemisphere 35.2
2769 Male, age 72, unknown 29.7
1904 Male, age 53, unknown 28.8
2227 Male, age 72, unknown 28.4
1865 Male, age 51, unknown 27.7
2823 Male, age 76, right hemisphere 27.4
1821 Female, age 72, unknown 27.2
2785 Male, age 18, unknown 24.7
2725 Female, age 75, unknown 24.5
2503 Female, age 72, unknown 23.6
1954 Female, age 42, unknown 22.1
Substantia nigra
nTPM: 18.8
2583 Male, age 75, right hemisphere 25.4
2590 Female, age 75, unknown 20.5
1941 Male, age 53, unknown 20.0
1851 Male, age 51, unknown 19.6
1889 Female, age 72, unknown 18.9
2665 Male, age 74, both hemispheres 18.2
2241 Male, age 72, unknown 18.0
2699 Male, age 18, unknown 16.6
1916 Female, age 42, unknown 15.8
2409 Female, age 72, unknown 14.9
Superior colliculus
nTPM: 21.1
1913 Female, age 42, unknown 30.2
2587 Male, age 74, left hemisphere 24.8
1995 Male, age 72, unknown 23.5
1839 Male, age 51, unknown 22.2
1895 Male, age 76, right hemisphere 20.3
2668 Female, age 75, unknown 19.3
2261 Male, age 18, unknown 19.0
1796 Male, age 53, unknown 18.4
2664 Male, age 75, both hemispheres 17.6
2087 Female, age 72, unknown 15.5
Ventral tegmental area
nTPM: 23.3
2223 Female, age 72, unknown 34.7
2021 Male, age 53, unknown 23.3
1942 Male, age 51, unknown 22.2
2218 Male, age 76, both hemispheres 21.7
2410 Female, age 72, unknown 19.6
1915 Female, age 42, unknown 18.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 139

Max nTPM: 16.0
Min nTPM: 2.4
Std nTPM: 1.9
Median nTPM: 5.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 10.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 8.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 8.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 8.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 8.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 8.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.9
FF:10158-103A5 76 years, female 50.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.8
Samples: 4

Max nTPM: 23.1
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 15.6
Sample C Male 14.1
Sample D Male 23.1
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 12.7
Sample A Female 23.2
Sample B Female 15.3
Sample C Male 12.7
Sample D Male 14.1
Periaqueductal gray
nTPM: 16.1
Samples: 3

Max nTPM: 20.0
Min nTPM: 12.4
Sample B Female 16.0
Sample C Male 12.4
Sample D Male 20.0
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 17.2
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 11.9
Sample C Male 16.4
Sample D Male 17.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.8
Sample A Male 7.9
Sample B Male 9.2
Sample C Female 7.8
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71211671 Antisense, RP_050816_02_B04, Mouse strain C57BL/6J (56 days, male) 0.5

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