MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.2 nTPM
HPA Brain:157.7 nTPM
GTEx:141.2 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:118.3 nTPM
Mouse:232.9 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 157.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.7
2586 Male, age 75, left hemisphere 208.2
2828 Female, age 72, unknown 151.2
1827 Male, age 72, unknown 141.7
2666 Male, age 74, left hemisphere 129.5
2019 Male, age 18, unknown 121.5
2411 Female, age 72, unknown 118.3
1870 Female, age 42, unknown 111.4
1833 Male, age 53, unknown 103.6
1830 Male, age 51, unknown 99.5
2219 Male, age 76, both hemispheres 91.6
Dorsal raphe nucleus
nTPM: 147.7
2298 Female, age 72, unknown 179.8
2047 Male, age 72, unknown 165.7
2016 Female, age 72, unknown 141.9
1828 Male, age 53, unknown 131.6
2750 Male, age 76, both hemispheres 119.5
Inferior colliculus
nTPM: 111.3
2097 Female, age 72, unknown 119.7
1848 Female, age 42, unknown 112.4
1890 Male, age 53, unknown 111.9
2849 Male, age 72, unknown 101.1
Median raphe nucleus
nTPM: 125.6
2220 Male, age 76, midline 125.6
Periaquaductal grey, anterior
nTPM: 157.7
1795 Male, age 51, unknown 175.9
2502 Female, age 75, unknown 149.9
1947 Male, age 18, unknown 147.2
Periaquaductal grey, dorsal
nTPM: 141.4
1840 Male, age 53, unknown 162.5
2850 Male, age 76, both hemispheres 149.6
1831 Male, age 72, unknown 139.1
2464 Female, age 72, unknown 114.2
Periaquaductal grey, lateral
nTPM: 147.2
2272 Male, age 74, both hemispheres 151.5
2140 Male, age 76, both hemispheres 150.5
2053 Male, age 18, unknown 139.6
Pretectal area
nTPM: 147.7
1816 Male, age 51, unknown 169.2
2007 Male, age 72, unknown 162.4
1944 Female, age 72, unknown 162.1
2273 Male, age 74, both hemispheres 155.7
1817 Female, age 42, unknown 148.5
1815 Male, age 53, unknown 146.7
2667 Female, age 75, unknown 141.8
2224 Female, age 72, unknown 141.5
2825 Male, age 18, unknown 136.5
2316 Male, age 76, right hemisphere 130.7
2407 Male, age 75, both hemispheres 129.6
Red nucleus
nTPM: 112.5
2785 Male, age 18, unknown 133.5
2584 Male, age 75, left hemisphere 124.4
2725 Female, age 75, unknown 116.7
1821 Female, age 72, unknown 115.5
2769 Male, age 72, unknown 112.6
1904 Male, age 53, unknown 110.4
2588 Male, age 74, left hemisphere 110.0
2503 Female, age 72, unknown 109.8
2823 Male, age 76, right hemisphere 109.0
2227 Male, age 72, unknown 103.1
1865 Male, age 51, unknown 102.9
1954 Female, age 42, unknown 101.9
Substantia nigra
nTPM: 142.9
1916 Female, age 42, unknown 181.0
1851 Male, age 51, unknown 159.5
2665 Male, age 74, both hemispheres 157.6
1889 Female, age 72, unknown 141.5
2583 Male, age 75, right hemisphere 136.0
1941 Male, age 53, unknown 135.8
2409 Female, age 72, unknown 135.8
2590 Female, age 75, unknown 131.6
2699 Male, age 18, unknown 131.6
2241 Male, age 72, unknown 118.2
Superior colliculus
nTPM: 137.7
2664 Male, age 75, both hemispheres 168.3
1796 Male, age 53, unknown 157.1
2668 Female, age 75, unknown 153.8
2261 Male, age 18, unknown 153.1
2087 Female, age 72, unknown 143.0
1995 Male, age 72, unknown 137.5
1839 Male, age 51, unknown 120.4
2587 Male, age 74, left hemisphere 120.2
1913 Female, age 42, unknown 118.5
1895 Male, age 76, right hemisphere 105.5
Ventral tegmental area
nTPM: 137.6
1915 Female, age 42, unknown 154.5
1942 Male, age 51, unknown 145.6
2021 Male, age 53, unknown 143.7
2410 Female, age 72, unknown 142.9
2218 Male, age 76, both hemispheres 128.5
2223 Female, age 72, unknown 110.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 141.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.2
Samples: 139

Max nTPM: 403.2
Min nTPM: 57.9
Std nTPM: 46.4
Median nTPM: 132.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 403.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 313.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 297.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 285.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 276.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 246.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 239.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 225.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 221.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 212.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 205.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 118.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.7
Samples: 4

Max nTPM: 141.0
Min nTPM: 81.4
Sample A Female 141.0
Sample B Female 94.0
Sample C Male 106.4
Sample D Male 81.4
Midbrain
nTPM: 118.4
Samples: 4

Max nTPM: 174.7
Min nTPM: 82.8
Sample A Female 174.7
Sample B Female 97.0
Sample C Male 118.9
Sample D Male 82.8
Periaqueductal gray
nTPM: 92.7
Samples: 3

Max nTPM: 107.2
Min nTPM: 81.5
Sample B Female 89.5
Sample C Male 107.2
Sample D Male 81.5
Superior colliculi
nTPM: 102.5
Samples: 4

Max nTPM: 127.8
Min nTPM: 88.8
Sample A Female 127.8
Sample B Female 94.6
Sample C Male 98.8
Sample D Male 88.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 232.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 232.9
Samples: 4

Max nTPM: 249.8
Min nTPM: 214.6
Sample A Male 249.8
Sample B Male 214.6
Sample C Female 219.2
Sample D Female 248.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
513 Antisense, RP_Baylor_102825, Mouse strain C57BL/6J (56 days, male) 9.1
512 Antisense, RP_Baylor_102825, Mouse strain C57BL/6J (56 days, male) 7.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org