MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA Brain:60.6 nTPM
GTEx:9.8 nTPM
FANTOM5:59.2 Scaled Tags Per Million
Pig:67.3 nTPM
Mouse:23.2 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.1
1827 Male, age 72, unknown 61.9
2586 Male, age 75, left hemisphere 54.9
2828 Female, age 72, unknown 51.5
2666 Male, age 74, left hemisphere 50.7
1833 Male, age 53, unknown 48.7
1870 Female, age 42, unknown 48.3
2411 Female, age 72, unknown 48.2
2019 Male, age 18, unknown 47.5
2219 Male, age 76, both hemispheres 45.9
1830 Male, age 51, unknown 43.1
Dorsal raphe nucleus
nTPM: 52.3
2298 Female, age 72, unknown 56.9
2047 Male, age 72, unknown 55.8
1828 Male, age 53, unknown 50.8
2750 Male, age 76, both hemispheres 50.7
2016 Female, age 72, unknown 47.1
Inferior colliculus
nTPM: 57.6
2097 Female, age 72, unknown 60.9
1848 Female, age 42, unknown 59.0
2849 Male, age 72, unknown 57.8
1890 Male, age 53, unknown 52.6
Median raphe nucleus
nTPM: 51.3
2220 Male, age 76, midline 51.3
Periaquaductal grey, anterior
nTPM: 55.6
1795 Male, age 51, unknown 56.7
2502 Female, age 75, unknown 55.6
1947 Male, age 18, unknown 54.6
Periaquaductal grey, dorsal
nTPM: 51.4
1840 Male, age 53, unknown 59.7
2464 Female, age 72, unknown 53.6
1831 Male, age 72, unknown 46.4
2850 Male, age 76, both hemispheres 46.0
Periaquaductal grey, lateral
nTPM: 46.5
2053 Male, age 18, unknown 47.1
2272 Male, age 74, both hemispheres 46.5
2140 Male, age 76, both hemispheres 45.9
Pretectal area
nTPM: 56.5
1816 Male, age 51, unknown 74.5
1944 Female, age 72, unknown 67.4
2007 Male, age 72, unknown 65.6
1817 Female, age 42, unknown 64.2
2224 Female, age 72, unknown 56.7
1815 Male, age 53, unknown 56.4
2667 Female, age 75, unknown 53.0
2825 Male, age 18, unknown 50.5
2407 Male, age 75, both hemispheres 48.4
2273 Male, age 74, both hemispheres 44.8
2316 Male, age 76, right hemisphere 39.8
Red nucleus
nTPM: 44.3
2725 Female, age 75, unknown 51.9
1821 Female, age 72, unknown 49.3
2503 Female, age 72, unknown 48.9
2584 Male, age 75, left hemisphere 47.5
2588 Male, age 74, left hemisphere 46.4
2785 Male, age 18, unknown 45.8
1954 Female, age 42, unknown 42.6
2227 Male, age 72, unknown 42.0
2769 Male, age 72, unknown 41.3
2823 Male, age 76, right hemisphere 41.2
1904 Male, age 53, unknown 38.8
1865 Male, age 51, unknown 36.1
Substantia nigra
nTPM: 60.6
1916 Female, age 42, unknown 68.0
1941 Male, age 53, unknown 64.7
2583 Male, age 75, right hemisphere 63.7
2241 Male, age 72, unknown 63.0
2665 Male, age 74, both hemispheres 62.8
1889 Female, age 72, unknown 60.5
1851 Male, age 51, unknown 59.0
2409 Female, age 72, unknown 57.5
2699 Male, age 18, unknown 57.4
2590 Female, age 75, unknown 49.2
Superior colliculus
nTPM: 51.4
2087 Female, age 72, unknown 61.9
2261 Male, age 18, unknown 59.8
1796 Male, age 53, unknown 55.6
2668 Female, age 75, unknown 55.5
1839 Male, age 51, unknown 55.0
2664 Male, age 75, both hemispheres 51.4
2587 Male, age 74, left hemisphere 49.3
1895 Male, age 76, right hemisphere 46.5
1913 Female, age 42, unknown 40.7
1995 Male, age 72, unknown 37.9
Ventral tegmental area
nTPM: 51.8
1915 Female, age 42, unknown 56.7
2410 Female, age 72, unknown 55.2
2218 Male, age 76, both hemispheres 53.5
1942 Male, age 51, unknown 50.4
2021 Male, age 53, unknown 48.5
2223 Female, age 72, unknown 46.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.8
Samples: 139

Max nTPM: 17.6
Min nTPM: 5.6
Std nTPM: 1.9
Median nTPM: 9.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 17.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 16.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 14.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 12.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 12.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 12.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 12.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.2
FF:10158-103A5 76 years, female 59.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.3
Samples: 4

Max nTPM: 88.3
Min nTPM: 40.9
Sample A Female 79.4
Sample B Female 52.7
Sample C Male 88.3
Sample D Male 40.9
Midbrain
nTPM: 67.4
Samples: 4

Max nTPM: 84.0
Min nTPM: 39.9
Sample A Female 39.9
Sample B Female 69.9
Sample C Male 84.0
Sample D Male 75.6
Periaqueductal gray
nTPM: 63.4
Samples: 3

Max nTPM: 72.8
Min nTPM: 55.7
Sample B Female 61.7
Sample C Male 72.8
Sample D Male 55.7
Superior colliculi
nTPM: 66.1
Samples: 4

Max nTPM: 78.1
Min nTPM: 42.1
Sample A Female 73.5
Sample B Female 42.1
Sample C Male 78.1
Sample D Male 70.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 24.6
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 23.7
Sample C Female 24.6
Sample D Female 24.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70785726 Antisense, RP_050706_02_D10, Mouse strain C57BL/6J (56 days, male) 1.0

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