MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1725.0 nTPM
HPA Brain:508.5 nTPM
GTEx:1725.0 nTPM
FANTOM5:1128.7 Scaled Tags Per Million
Pig:345.3 nTPM
Mouse:874.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 508.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 435.1
2666 Male, age 74, left hemisphere 500.3
1870 Female, age 42, unknown 487.2
2019 Male, age 18, unknown 445.2
1833 Male, age 53, unknown 440.2
1830 Male, age 51, unknown 439.7
2586 Male, age 75, left hemisphere 424.8
2411 Female, age 72, unknown 423.2
2828 Female, age 72, unknown 409.7
2219 Male, age 76, both hemispheres 398.2
1827 Male, age 72, unknown 382.4
Dorsal raphe nucleus
nTPM: 392.4
2750 Male, age 76, both hemispheres 508.0
2016 Female, age 72, unknown 395.4
1828 Male, age 53, unknown 358.7
2047 Male, age 72, unknown 352.4
2298 Female, age 72, unknown 347.7
Inferior colliculus
nTPM: 412.2
2849 Male, age 72, unknown 472.8
1848 Female, age 42, unknown 412.4
1890 Male, age 53, unknown 409.6
2097 Female, age 72, unknown 354.0
Median raphe nucleus
nTPM: 469.2
2220 Male, age 76, midline 469.2
Periaquaductal grey, anterior
nTPM: 391.7
2502 Female, age 75, unknown 425.8
1947 Male, age 18, unknown 388.4
1795 Male, age 51, unknown 360.8
Periaquaductal grey, dorsal
nTPM: 369.2
2850 Male, age 76, both hemispheres 414.6
1840 Male, age 53, unknown 399.3
1831 Male, age 72, unknown 339.0
2464 Female, age 72, unknown 324.0
Periaquaductal grey, lateral
nTPM: 332.6
2140 Male, age 76, both hemispheres 352.7
2053 Male, age 18, unknown 346.5
2272 Male, age 74, both hemispheres 298.7
Pretectal area
nTPM: 400.9
1944 Female, age 72, unknown 459.1
1817 Female, age 42, unknown 458.1
2007 Male, age 72, unknown 452.0
1815 Male, age 53, unknown 436.6
1816 Male, age 51, unknown 416.0
2667 Female, age 75, unknown 414.0
2224 Female, age 72, unknown 401.6
2825 Male, age 18, unknown 384.9
2316 Male, age 76, right hemisphere 373.3
2407 Male, age 75, both hemispheres 345.9
2273 Male, age 74, both hemispheres 268.8
Red nucleus
nTPM: 508.5
2503 Female, age 72, unknown 633.9
1865 Male, age 51, unknown 588.4
1904 Male, age 53, unknown 527.2
2725 Female, age 75, unknown 497.8
2584 Male, age 75, left hemisphere 497.6
2769 Male, age 72, unknown 497.0
1821 Female, age 72, unknown 494.6
2588 Male, age 74, left hemisphere 491.4
2227 Male, age 72, unknown 490.3
2785 Male, age 18, unknown 479.4
1954 Female, age 42, unknown 467.3
2823 Male, age 76, right hemisphere 437.5
Substantia nigra
nTPM: 491.2
2699 Male, age 18, unknown 560.5
2665 Male, age 74, both hemispheres 559.0
2409 Female, age 72, unknown 552.4
1916 Female, age 42, unknown 548.6
1851 Male, age 51, unknown 530.8
2241 Male, age 72, unknown 481.7
1889 Female, age 72, unknown 477.3
1941 Male, age 53, unknown 427.2
2590 Female, age 75, unknown 392.4
2583 Male, age 75, right hemisphere 382.1
Superior colliculus
nTPM: 430.2
2587 Male, age 74, left hemisphere 532.8
1913 Female, age 42, unknown 504.0
1796 Male, age 53, unknown 503.1
2668 Female, age 75, unknown 471.1
1995 Male, age 72, unknown 464.9
1895 Male, age 76, right hemisphere 383.4
2261 Male, age 18, unknown 376.4
1839 Male, age 51, unknown 368.6
2087 Female, age 72, unknown 362.0
2664 Male, age 75, both hemispheres 335.8
Ventral tegmental area
nTPM: 472.2
2223 Female, age 72, unknown 620.1
1915 Female, age 42, unknown 537.5
2218 Male, age 76, both hemispheres 450.5
1942 Male, age 51, unknown 431.2
2410 Female, age 72, unknown 410.2
2021 Male, age 53, unknown 383.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1725.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1725.0
Samples: 139

Max nTPM: 6732.6
Min nTPM: 697.0
Std nTPM: 763.4
Median nTPM: 1569.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6732.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5043.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4405.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3109.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3049.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2976.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2966.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2946.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2927.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2761.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2737.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1128.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1128.7
FF:10158-103A5 76 years, female 1128.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 345.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 334.3
Samples: 4

Max nTPM: 473.1
Min nTPM: 256.0
Sample A Female 473.1
Sample B Female 334.8
Sample C Male 256.0
Sample D Male 273.3
Midbrain
nTPM: 345.4
Samples: 4

Max nTPM: 589.6
Min nTPM: 181.2
Sample A Female 589.6
Sample B Female 357.2
Sample C Male 253.4
Sample D Male 181.2
Periaqueductal gray
nTPM: 239.2
Samples: 3

Max nTPM: 263.3
Min nTPM: 214.9
Sample B Female 263.3
Sample C Male 239.5
Sample D Male 214.9
Superior colliculi
nTPM: 319.0
Samples: 4

Max nTPM: 415.9
Min nTPM: 263.2
Sample A Female 415.9
Sample B Female 292.7
Sample C Male 304.1
Sample D Male 263.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 874.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 874.2
Samples: 4

Max nTPM: 1047.4
Min nTPM: 775.3
Sample A Male 1047.4
Sample B Male 807.7
Sample C Female 775.3
Sample D Female 866.2

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