MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.7 nTPM
HPA Brain:88.3 nTPM
GTEx:128.7 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:89.6 nTPM
Mouse:51.5 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.4
2586 Male, age 75, left hemisphere 140.6
2828 Female, age 72, unknown 111.5
2666 Male, age 74, left hemisphere 101.0
1827 Male, age 72, unknown 83.1
1833 Male, age 53, unknown 80.3
1870 Female, age 42, unknown 76.0
2411 Female, age 72, unknown 72.1
1830 Male, age 51, unknown 71.1
2219 Male, age 76, both hemispheres 63.1
2019 Male, age 18, unknown 55.1
Dorsal raphe nucleus
nTPM: 86.8
2016 Female, age 72, unknown 100.1
2047 Male, age 72, unknown 95.6
1828 Male, age 53, unknown 82.7
2750 Male, age 76, both hemispheres 79.0
2298 Female, age 72, unknown 76.6
Inferior colliculus
nTPM: 75.8
2849 Male, age 72, unknown 88.0
1890 Male, age 53, unknown 81.1
1848 Female, age 42, unknown 74.5
2097 Female, age 72, unknown 59.7
Median raphe nucleus
nTPM: 88.3
2220 Male, age 76, midline 88.3
Periaquaductal grey, anterior
nTPM: 84.1
1795 Male, age 51, unknown 90.0
1947 Male, age 18, unknown 87.0
2502 Female, age 75, unknown 75.3
Periaquaductal grey, dorsal
nTPM: 77.3
1840 Male, age 53, unknown 89.6
2850 Male, age 76, both hemispheres 77.7
2464 Female, age 72, unknown 73.6
1831 Male, age 72, unknown 68.4
Periaquaductal grey, lateral
nTPM: 75.2
2053 Male, age 18, unknown 88.0
2140 Male, age 76, both hemispheres 76.8
2272 Male, age 74, both hemispheres 60.8
Pretectal area
nTPM: 72.5
2825 Male, age 18, unknown 96.1
2316 Male, age 76, right hemisphere 82.2
2007 Male, age 72, unknown 75.4
2224 Female, age 72, unknown 73.6
2407 Male, age 75, both hemispheres 73.5
1815 Male, age 53, unknown 70.6
1816 Male, age 51, unknown 70.2
1817 Female, age 42, unknown 69.1
2667 Female, age 75, unknown 67.1
1944 Female, age 72, unknown 63.7
2273 Male, age 74, both hemispheres 56.4
Red nucleus
nTPM: 80.1
2584 Male, age 75, left hemisphere 98.0
2503 Female, age 72, unknown 90.3
2769 Male, age 72, unknown 90.2
2588 Male, age 74, left hemisphere 89.6
2227 Male, age 72, unknown 86.9
1954 Female, age 42, unknown 81.3
2725 Female, age 75, unknown 78.0
1821 Female, age 72, unknown 76.0
1904 Male, age 53, unknown 72.7
2823 Male, age 76, right hemisphere 72.7
1865 Male, age 51, unknown 66.6
2785 Male, age 18, unknown 58.8
Substantia nigra
nTPM: 86.2
2665 Male, age 74, both hemispheres 111.9
1916 Female, age 42, unknown 99.5
2699 Male, age 18, unknown 98.9
2583 Male, age 75, right hemisphere 94.9
2590 Female, age 75, unknown 93.8
1851 Male, age 51, unknown 90.7
1889 Female, age 72, unknown 71.4
1941 Male, age 53, unknown 71.3
2409 Female, age 72, unknown 65.5
2241 Male, age 72, unknown 64.2
Superior colliculus
nTPM: 78.8
2664 Male, age 75, both hemispheres 122.2
2668 Female, age 75, unknown 84.9
1796 Male, age 53, unknown 82.8
2261 Male, age 18, unknown 81.2
2587 Male, age 74, left hemisphere 79.5
1839 Male, age 51, unknown 79.0
1995 Male, age 72, unknown 67.1
1913 Female, age 42, unknown 65.2
1895 Male, age 76, right hemisphere 64.5
2087 Female, age 72, unknown 62.0
Ventral tegmental area
nTPM: 84.0
1915 Female, age 42, unknown 104.6
1942 Male, age 51, unknown 99.6
2021 Male, age 53, unknown 87.1
2218 Male, age 76, both hemispheres 74.7
2410 Female, age 72, unknown 73.7
2223 Female, age 72, unknown 64.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 128.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.7
Samples: 139

Max nTPM: 240.6
Min nTPM: 43.9
Std nTPM: 40.9
Median nTPM: 126.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 240.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 230.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 223.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 215.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 213.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 209.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 203.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 200.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 194.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 194.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 192.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.6
Samples: 4

Max nTPM: 109.1
Min nTPM: 67.1
Sample A Female 105.1
Sample B Female 77.2
Sample C Male 109.1
Sample D Male 67.1
Midbrain
nTPM: 82.2
Samples: 4

Max nTPM: 90.7
Min nTPM: 78.2
Sample A Female 78.2
Sample B Female 81.0
Sample C Male 90.7
Sample D Male 79.0
Periaqueductal gray
nTPM: 73.1
Samples: 3

Max nTPM: 85.3
Min nTPM: 61.5
Sample B Female 72.5
Sample C Male 85.3
Sample D Male 61.5
Superior colliculi
nTPM: 88.5
Samples: 4

Max nTPM: 102.9
Min nTPM: 76.6
Sample A Female 102.9
Sample B Female 76.6
Sample C Male 87.5
Sample D Male 86.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 62.1
Min nTPM: 44.9
Sample A Male 62.1
Sample B Male 51.7
Sample C Female 44.9
Sample D Female 47.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
75694242 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 1.6
75079746 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 1.3

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