HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:25.7 nTPM
HPA Brain:19.3 nTPM
GTEx:25.7 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:41.9 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019539
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.3
Sample id Sample description nTPM
Hippocampus
nTPM: 17.4
1898 Male, age 80, left hemisphere 25.2
1855 Male, age 76, left hemisphere 18.9
2529 Female, age 94, left hemisphere 16.3
1911 Female, age 85, right hemisphere 15.0
2148 Female, age 91, left hemisphere 14.9
2621 Female, age 67, right hemisphere 14.1
Dentate gyrus
nTPM: 16.9
1927 Female, age 91, both hemispheres 21.5
2010 Male, age 76, both hemispheres 20.7
2530 Female, age 94, left hemisphere 19.5
2246 Female, age 85, both hemispheres 14.5
2528 Male, age 74, both hemispheres 12.7
2531 Female, age 67, both hemispheres 12.3
Entorhinal gyrus
nTPM: 15.9
1938 Female, age 85, left hemisphere 18.7
2764 Male, age 80, right hemisphere 17.5
2613 Female, age 94, left hemisphere 17.3
1787 Male, age 76, left hemisphere 16.0
2117 Female, age 91, right hemisphere 13.8
2686 Male, age 75, right hemisphere 12.1
Hippocampus, CA1
nTPM: 19.3
2749 Male, age 80, left hemisphere 29.1
1873 Female, age 85, both hemispheres 21.3
2045 Male, age 76, both hemispheres 17.0
2527 Male, age 74, both hemispheres 15.5
2082 Female, age 91, right hemisphere 13.6
Hippocampus, CA2
nTPM: 18.3
1892 Male, age 76, both hemispheres 24.0
1963 Male, age 80, left hemisphere 23.3
2249 Male, age 74, both hemispheres 17.7
2113 Female, age 91, right hemisphere 15.4
1940 Female, age 85, left hemisphere 14.9
2437 Female, age 94, left hemisphere 14.4
Hippocampus, CA3
nTPM: 17.1
1867 Male, age 76, both hemispheres 22.4
2436 Male, age 74, both hemispheres 20.2
2137 Male, age 80, left hemisphere 19.4
1891 Female, age 85, both hemispheres 16.4
2620 Female, age 94, left hemisphere 12.0
2861 Female, age 67, both hemispheres 12.0
Parahippocampal cortex
nTPM: 15.3
1850 Male, age 80, both hemispheres 19.9
1990 Female, age 91, right hemisphere 17.1
1933 Female, age 85, both hemispheres 16.8
2245 Female, age 91, both hemispheres 16.4
2250 Female, age 67, right hemisphere 16.2
2693 Female, age 94, both hemispheres 14.6
2018 Male, age 76, both hemispheres 14.2
2532 Female, age 72, left hemisphere 13.6
2692 Male, age 74, both hemispheres 13.0
2622 Female, age 67, right hemisphere 10.8
Perirhinal gyrus
nTPM: 18.7
1847 Female, age 91, left hemisphere 21.8
2521 Female, age 94, right hemisphere 19.7
1841 Female, age 85, right hemisphere 18.6
1794 Male, age 80, right hemisphere 17.0
2848 Male, age 76, right hemisphere 16.2
Subiculum
nTPM: 14.2
1977 Female, age 85, both hemispheres 18.1
1901 Male, age 80, both hemispheres 18.0
2042 Male, age 76, both hemispheres 15.1
2729 Female, age 91, right hemisphere 12.4
2438 Female, age 94, left hemisphere 11.1
2619 Male, age 74, both hemispheres 10.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.7
Samples: 197

Max nTPM: 62.5
Min nTPM: 9.7
Std nTPM: 8.9
Median nTPM: 24.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 62.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 51.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 49.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 48.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 48.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 46.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 46.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 43.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 43.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 42.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 42.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.5
FF:10169-103B7 60 years, female 96.5
FF:10153-102I9 76 years, female 40.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Subiculum
nTPM: 16.8
Samples: 4

Max nTPM: 17.6
Min nTPM: 16.1
Sample A Female 16.7
Sample B Female 16.1
Sample C Male 17.6
Sample D Male 16.7
Dorsal hippocampus
nTPM: 16.3
Samples: 4

Max nTPM: 16.8
Min nTPM: 16.0
Sample A Female 16.8
Sample B Female 16.2
Sample C Male 16.2
Sample D Male 16.0
Entorhinal cortex
nTPM: 15.3
Samples: 4

Max nTPM: 15.8
Min nTPM: 14.9
Sample A Female 15.1
Sample B Female 15.3
Sample C Male 14.9
Sample D Male 15.8
Ventral hippocampus
nTPM: 15.9
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.7
Sample A Female 16.5
Sample B Female 15.1
Sample C Male 14.7
Sample D Male 17.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.0
Samples: 4

Max nTPM: 39.8
Min nTPM: 36.1
Sample A Male 38.3
Sample B Male 37.7
Sample C Female 39.8
Sample D Female 36.1
Hippocampal formation
nTPM: 41.9
Samples: 4

Max nTPM: 46.3
Min nTPM: 38.9
Sample A Male 46.3
Sample B Male 42.6
Sample C Female 39.6
Sample D Female 38.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
70429495 Antisense, RP_050614_01_G10, Mouse strain C57BL/6J (56 days, male) 0.2

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