MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA Brain:20.0 nTPM
GTEx:23.1 nTPM
FANTOM5:53.6 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:36.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.3
2019 Male, age 18, unknown 18.0
1870 Female, age 42, unknown 17.9
1827 Male, age 72, unknown 16.5
2411 Female, age 72, unknown 16.0
1833 Male, age 53, unknown 15.9
2219 Male, age 76, both hemispheres 15.8
1830 Male, age 51, unknown 15.2
2666 Male, age 74, left hemisphere 14.2
2586 Male, age 75, left hemisphere 12.5
2828 Female, age 72, unknown 11.2
Dorsal raphe nucleus
nTPM: 19.0
2298 Female, age 72, unknown 25.4
2750 Male, age 76, both hemispheres 18.4
2047 Male, age 72, unknown 17.3
2016 Female, age 72, unknown 17.1
1828 Male, age 53, unknown 16.8
Inferior colliculus
nTPM: 15.3
2097 Female, age 72, unknown 18.6
1890 Male, age 53, unknown 15.2
2849 Male, age 72, unknown 14.1
1848 Female, age 42, unknown 13.4
Median raphe nucleus
nTPM: 20.0
2220 Male, age 76, midline 20.0
Periaquaductal grey, anterior
nTPM: 17.8
1947 Male, age 18, unknown 19.5
2502 Female, age 75, unknown 17.5
1795 Male, age 51, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 18.1
2850 Male, age 76, both hemispheres 24.2
1840 Male, age 53, unknown 18.0
1831 Male, age 72, unknown 15.4
2464 Female, age 72, unknown 14.7
Periaquaductal grey, lateral
nTPM: 19.0
2272 Male, age 74, both hemispheres 25.9
2140 Male, age 76, both hemispheres 17.5
2053 Male, age 18, unknown 13.6
Pretectal area
nTPM: 19.2
2273 Male, age 74, both hemispheres 23.6
2007 Male, age 72, unknown 21.8
1816 Male, age 51, unknown 21.5
2224 Female, age 72, unknown 21.3
1944 Female, age 72, unknown 21.1
1817 Female, age 42, unknown 20.7
2667 Female, age 75, unknown 20.2
1815 Male, age 53, unknown 19.5
2825 Male, age 18, unknown 15.7
2316 Male, age 76, right hemisphere 13.6
2407 Male, age 75, both hemispheres 12.7
Red nucleus
nTPM: 15.3
2725 Female, age 75, unknown 17.8
2785 Male, age 18, unknown 17.2
1821 Female, age 72, unknown 17.0
2227 Male, age 72, unknown 15.5
1904 Male, age 53, unknown 15.3
1954 Female, age 42, unknown 15.2
2588 Male, age 74, left hemisphere 15.2
1865 Male, age 51, unknown 14.5
2823 Male, age 76, right hemisphere 14.2
2503 Female, age 72, unknown 14.1
2769 Male, age 72, unknown 13.9
2584 Male, age 75, left hemisphere 13.8
Substantia nigra
nTPM: 18.9
1916 Female, age 42, unknown 24.6
1941 Male, age 53, unknown 23.4
1889 Female, age 72, unknown 22.2
2241 Male, age 72, unknown 22.2
1851 Male, age 51, unknown 19.9
2409 Female, age 72, unknown 17.0
2699 Male, age 18, unknown 16.1
2583 Male, age 75, right hemisphere 16.0
2665 Male, age 74, both hemispheres 14.2
2590 Female, age 75, unknown 13.5
Superior colliculus
nTPM: 15.7
2261 Male, age 18, unknown 19.9
2087 Female, age 72, unknown 18.5
2587 Male, age 74, left hemisphere 17.7
2668 Female, age 75, unknown 17.2
1895 Male, age 76, right hemisphere 15.3
1995 Male, age 72, unknown 15.0
1913 Female, age 42, unknown 14.2
1839 Male, age 51, unknown 14.0
1796 Male, age 53, unknown 13.8
2664 Male, age 75, both hemispheres 11.5
Ventral tegmental area
nTPM: 17.0
2223 Female, age 72, unknown 17.8
1942 Male, age 51, unknown 17.5
1915 Female, age 42, unknown 17.4
2218 Male, age 76, both hemispheres 17.1
2410 Female, age 72, unknown 16.8
2021 Male, age 53, unknown 15.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.1
Samples: 139

Max nTPM: 44.4
Min nTPM: 10.9
Std nTPM: 6.2
Median nTPM: 22.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 39.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 38.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 38.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 33.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 33.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 32.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 32.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 31.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.6
FF:10158-103A5 76 years, female 53.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 16.2
Min nTPM: 13.8
Sample A Female 16.2
Sample B Female 13.8
Sample C Male 15.7
Sample D Male 16.0
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.9
Sample A Female 16.7
Sample B Female 14.9
Sample C Male 17.7
Sample D Male 17.0
Periaqueductal gray
nTPM: 14.5
Samples: 3

Max nTPM: 14.9
Min nTPM: 13.9
Sample B Female 13.9
Sample C Male 14.7
Sample D Male 14.9
Superior colliculi
nTPM: 15.3
Samples: 4

Max nTPM: 16.1
Min nTPM: 14.9
Sample A Female 15.3
Sample B Female 14.9
Sample C Male 16.1
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 39.1
Min nTPM: 34.3
Sample A Male 39.1
Sample B Male 35.4
Sample C Female 34.3
Sample D Female 35.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70429495 Antisense, RP_050614_01_G10, Mouse strain C57BL/6J (56 days, male) 0.1

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