MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:487.9 nTPM
HPA Brain:165.1 nTPM
GTEx:487.9 nTPM
FANTOM5:17.2 Scaled Tags Per Million
Pig:342.7 nTPM
Mouse:648.3 nTPM
Allen mouse:15.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 165.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.3
2219 Male, age 76, both hemispheres 137.0
1870 Female, age 42, unknown 136.0
2411 Female, age 72, unknown 128.3
1830 Male, age 51, unknown 108.2
1833 Male, age 53, unknown 108.1
1827 Male, age 72, unknown 98.5
2828 Female, age 72, unknown 93.7
2666 Male, age 74, left hemisphere 75.5
2019 Male, age 18, unknown 61.7
2586 Male, age 75, left hemisphere 35.8
Dorsal raphe nucleus
nTPM: 97.4
2750 Male, age 76, both hemispheres 114.1
2298 Female, age 72, unknown 111.3
2016 Female, age 72, unknown 108.5
1828 Male, age 53, unknown 93.4
2047 Male, age 72, unknown 59.7
Inferior colliculus
nTPM: 121.3
1848 Female, age 42, unknown 150.5
2849 Male, age 72, unknown 119.1
2097 Female, age 72, unknown 112.1
1890 Male, age 53, unknown 103.5
Median raphe nucleus
nTPM: 94.7
2220 Male, age 76, midline 94.7
Periaquaductal grey, anterior
nTPM: 165.1
2502 Female, age 75, unknown 238.6
1947 Male, age 18, unknown 177.9
1795 Male, age 51, unknown 78.9
Periaquaductal grey, dorsal
nTPM: 118.3
1831 Male, age 72, unknown 154.6
1840 Male, age 53, unknown 127.9
2850 Male, age 76, both hemispheres 98.6
2464 Female, age 72, unknown 91.9
Periaquaductal grey, lateral
nTPM: 126.8
2272 Male, age 74, both hemispheres 193.1
2140 Male, age 76, both hemispheres 95.6
2053 Male, age 18, unknown 91.8
Pretectal area
nTPM: 109.3
2273 Male, age 74, both hemispheres 185.2
2407 Male, age 75, both hemispheres 141.9
2224 Female, age 72, unknown 125.9
2825 Male, age 18, unknown 111.1
1944 Female, age 72, unknown 106.7
1816 Male, age 51, unknown 99.1
2667 Female, age 75, unknown 95.9
1817 Female, age 42, unknown 95.5
2007 Male, age 72, unknown 95.5
1815 Male, age 53, unknown 94.5
2316 Male, age 76, right hemisphere 51.6
Red nucleus
nTPM: 99.2
2503 Female, age 72, unknown 244.2
1821 Female, age 72, unknown 161.4
1865 Male, age 51, unknown 129.2
1954 Female, age 42, unknown 101.2
2227 Male, age 72, unknown 97.0
1904 Male, age 53, unknown 96.2
2769 Male, age 72, unknown 78.8
2584 Male, age 75, left hemisphere 75.6
2725 Female, age 75, unknown 71.7
2823 Male, age 76, right hemisphere 67.5
2785 Male, age 18, unknown 43.4
2588 Male, age 74, left hemisphere 24.0
Substantia nigra
nTPM: 119.7
2699 Male, age 18, unknown 245.4
1941 Male, age 53, unknown 156.4
1851 Male, age 51, unknown 131.0
2409 Female, age 72, unknown 127.1
2665 Male, age 74, both hemispheres 119.2
1889 Female, age 72, unknown 113.6
2241 Male, age 72, unknown 96.9
1916 Female, age 42, unknown 95.2
2590 Female, age 75, unknown 78.0
2583 Male, age 75, right hemisphere 33.7
Superior colliculus
nTPM: 102.4
1913 Female, age 42, unknown 135.2
2261 Male, age 18, unknown 128.2
1995 Male, age 72, unknown 126.8
1796 Male, age 53, unknown 111.1
2668 Female, age 75, unknown 109.6
1895 Male, age 76, right hemisphere 109.3
2087 Female, age 72, unknown 100.5
1839 Male, age 51, unknown 97.4
2664 Male, age 75, both hemispheres 63.8
2587 Male, age 74, left hemisphere 42.3
Ventral tegmental area
nTPM: 126.8
2410 Female, age 72, unknown 175.4
2223 Female, age 72, unknown 155.3
2218 Male, age 76, both hemispheres 143.8
1942 Male, age 51, unknown 112.2
1915 Female, age 42, unknown 108.9
2021 Male, age 53, unknown 65.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 487.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 487.9
Samples: 139

Max nTPM: 939.8
Min nTPM: 227.2
Std nTPM: 146.0
Median nTPM: 468.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 939.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 864.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 843.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 832.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 790.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 788.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 773.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 735.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 716.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 712.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 704.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.2
FF:10158-103A5 76 years, female 17.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 342.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 332.5
Samples: 4

Max nTPM: 372.7
Min nTPM: 284.7
Sample A Female 372.7
Sample B Female 372.1
Sample C Male 300.6
Sample D Male 284.7
Midbrain
nTPM: 320.1
Samples: 4

Max nTPM: 439.5
Min nTPM: 243.6
Sample A Female 439.5
Sample B Female 329.3
Sample C Male 243.6
Sample D Male 268.0
Periaqueductal gray
nTPM: 279.8
Samples: 3

Max nTPM: 289.7
Min nTPM: 261.7
Sample B Female 289.7
Sample C Male 288.0
Sample D Male 261.7
Superior colliculi
nTPM: 342.7
Samples: 4

Max nTPM: 390.9
Min nTPM: 294.9
Sample A Female 380.0
Sample B Female 390.9
Sample C Male 294.9
Sample D Male 304.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 648.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 648.3
Samples: 4

Max nTPM: 669.2
Min nTPM: 622.0
Sample A Male 669.2
Sample B Male 655.9
Sample C Female 622.0
Sample D Female 646.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.8
69095958 Antisense, RP_050324_02_E07, Mouse strain C57BL/6J (56 days, male) 15.8

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