MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:33.5 nTPM
GTEx:12.6 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:10.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.2
2586 Male, age 75, left hemisphere 32.3
2828 Female, age 72, unknown 29.4
2019 Male, age 18, unknown 28.5
1827 Male, age 72, unknown 26.9
1870 Female, age 42, unknown 22.2
1830 Male, age 51, unknown 21.7
2219 Male, age 76, both hemispheres 21.6
2666 Male, age 74, left hemisphere 20.6
1833 Male, age 53, unknown 20.4
2411 Female, age 72, unknown 18.5
Dorsal raphe nucleus
nTPM: 26.9
2298 Female, age 72, unknown 32.0
2016 Female, age 72, unknown 28.7
1828 Male, age 53, unknown 27.3
2047 Male, age 72, unknown 27.3
2750 Male, age 76, both hemispheres 19.1
Inferior colliculus
nTPM: 30.2
2849 Male, age 72, unknown 33.4
2097 Female, age 72, unknown 30.7
1848 Female, age 42, unknown 30.5
1890 Male, age 53, unknown 26.4
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Periaquaductal grey, anterior
nTPM: 28.5
2502 Female, age 75, unknown 31.4
1795 Male, age 51, unknown 30.8
1947 Male, age 18, unknown 23.5
Periaquaductal grey, dorsal
nTPM: 31.5
2850 Male, age 76, both hemispheres 37.8
1840 Male, age 53, unknown 35.1
2464 Female, age 72, unknown 26.8
1831 Male, age 72, unknown 26.5
Periaquaductal grey, lateral
nTPM: 33.5
2272 Male, age 74, both hemispheres 37.0
2140 Male, age 76, both hemispheres 34.7
2053 Male, age 18, unknown 28.6
Pretectal area
nTPM: 28.0
2273 Male, age 74, both hemispheres 35.0
1944 Female, age 72, unknown 31.2
1816 Male, age 51, unknown 30.4
2224 Female, age 72, unknown 28.4
1817 Female, age 42, unknown 28.1
2007 Male, age 72, unknown 27.0
2407 Male, age 75, both hemispheres 27.0
2667 Female, age 75, unknown 26.2
2825 Male, age 18, unknown 25.9
1815 Male, age 53, unknown 25.1
2316 Male, age 76, right hemisphere 23.4
Red nucleus
nTPM: 21.8
2785 Male, age 18, unknown 26.2
2584 Male, age 75, left hemisphere 24.6
2769 Male, age 72, unknown 23.2
2725 Female, age 75, unknown 22.8
2227 Male, age 72, unknown 22.0
1821 Female, age 72, unknown 21.8
2588 Male, age 74, left hemisphere 21.8
1954 Female, age 42, unknown 21.7
2823 Male, age 76, right hemisphere 20.7
2503 Female, age 72, unknown 20.5
1904 Male, age 53, unknown 18.4
1865 Male, age 51, unknown 18.3
Substantia nigra
nTPM: 20.7
1889 Female, age 72, unknown 24.9
2583 Male, age 75, right hemisphere 23.9
2590 Female, age 75, unknown 23.3
1941 Male, age 53, unknown 23.2
2665 Male, age 74, both hemispheres 22.7
1851 Male, age 51, unknown 20.0
2699 Male, age 18, unknown 19.5
1916 Female, age 42, unknown 19.1
2241 Male, age 72, unknown 16.9
2409 Female, age 72, unknown 13.5
Superior colliculus
nTPM: 26.2
2664 Male, age 75, both hemispheres 41.1
1796 Male, age 53, unknown 29.9
2261 Male, age 18, unknown 28.0
1995 Male, age 72, unknown 27.1
2087 Female, age 72, unknown 26.8
1839 Male, age 51, unknown 26.4
2587 Male, age 74, left hemisphere 22.3
2668 Female, age 75, unknown 20.5
1895 Male, age 76, right hemisphere 20.2
1913 Female, age 42, unknown 20.1
Ventral tegmental area
nTPM: 23.1
2021 Male, age 53, unknown 26.1
1942 Male, age 51, unknown 25.1
1915 Female, age 42, unknown 25.0
2223 Female, age 72, unknown 21.3
2410 Female, age 72, unknown 20.8
2218 Male, age 76, both hemispheres 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.6
Samples: 139

Max nTPM: 30.5
Min nTPM: 4.5
Std nTPM: 4.0
Median nTPM: 12.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 26.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 24.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 22.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 22.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 21.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 20.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 19.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 19.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 19.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.5
Samples: 4

Max nTPM: 17.4
Min nTPM: 9.9
Sample A Female 17.4
Sample B Female 9.9
Sample C Male 12.0
Sample D Male 10.7
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.4
Sample A Female 14.4
Sample B Female 11.4
Sample C Male 12.4
Sample D Male 12.8
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 16.4
Min nTPM: 13.8
Sample B Female 13.8
Sample C Male 16.4
Sample D Male 15.6
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 18.8
Min nTPM: 11.9
Sample A Female 18.8
Sample B Female 12.1
Sample C Male 11.9
Sample D Male 13.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 10.1
Sample A Male 10.1
Sample B Male 10.8
Sample C Female 11.5
Sample D Female 10.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70231230 Antisense, RP_050526_01_F01, Mouse strain C57BL/6J (56 days, male) 0.0

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