MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:101.2 nTPM
HPA Brain:80.5 nTPM
GTEx:101.2 nTPM
FANTOM5:153.6 Scaled Tags Per Million
Pig:150.5 nTPM
Mouse:224.6 nTPM
Allen mouse:19.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.4
2019 Male, age 18, unknown 70.7
1827 Male, age 72, unknown 65.8
2219 Male, age 76, both hemispheres 65.6
2411 Female, age 72, unknown 65.6
2828 Female, age 72, unknown 55.6
1870 Female, age 42, unknown 53.5
2666 Male, age 74, left hemisphere 51.9
2586 Male, age 75, left hemisphere 49.5
1833 Male, age 53, unknown 48.3
1830 Male, age 51, unknown 47.1
Dorsal raphe nucleus
nTPM: 64.7
2298 Female, age 72, unknown 84.7
1828 Male, age 53, unknown 64.7
2047 Male, age 72, unknown 64.2
2750 Male, age 76, both hemispheres 62.1
2016 Female, age 72, unknown 47.7
Inferior colliculus
nTPM: 55.2
2097 Female, age 72, unknown 67.7
1890 Male, age 53, unknown 56.5
1848 Female, age 42, unknown 54.5
2849 Male, age 72, unknown 42.3
Median raphe nucleus
nTPM: 57.4
2220 Male, age 76, midline 57.4
Periaquaductal grey, anterior
nTPM: 63.2
1947 Male, age 18, unknown 66.1
1795 Male, age 51, unknown 64.0
2502 Female, age 75, unknown 59.5
Periaquaductal grey, dorsal
nTPM: 44.0
1840 Male, age 53, unknown 46.1
2464 Female, age 72, unknown 45.4
1831 Male, age 72, unknown 44.3
2850 Male, age 76, both hemispheres 40.3
Periaquaductal grey, lateral
nTPM: 46.1
2272 Male, age 74, both hemispheres 55.4
2053 Male, age 18, unknown 46.8
2140 Male, age 76, both hemispheres 36.2
Pretectal area
nTPM: 64.9
1944 Female, age 72, unknown 78.7
1817 Female, age 42, unknown 77.7
2007 Male, age 72, unknown 77.4
1816 Male, age 51, unknown 76.2
2273 Male, age 74, both hemispheres 70.1
2667 Female, age 75, unknown 67.4
1815 Male, age 53, unknown 63.7
2224 Female, age 72, unknown 60.7
2407 Male, age 75, both hemispheres 50.1
2825 Male, age 18, unknown 49.2
2316 Male, age 76, right hemisphere 43.1
Red nucleus
nTPM: 59.0
1821 Female, age 72, unknown 85.5
1865 Male, age 51, unknown 65.1
2785 Male, age 18, unknown 63.2
1904 Male, age 53, unknown 61.8
2725 Female, age 75, unknown 61.5
2769 Male, age 72, unknown 58.5
2227 Male, age 72, unknown 58.2
2503 Female, age 72, unknown 58.0
1954 Female, age 42, unknown 57.6
2823 Male, age 76, right hemisphere 51.7
2588 Male, age 74, left hemisphere 45.6
2584 Male, age 75, left hemisphere 41.8
Substantia nigra
nTPM: 80.5
1916 Female, age 42, unknown 119.7
1941 Male, age 53, unknown 95.1
1851 Male, age 51, unknown 92.6
2409 Female, age 72, unknown 90.6
2241 Male, age 72, unknown 82.9
1889 Female, age 72, unknown 76.5
2699 Male, age 18, unknown 64.1
2590 Female, age 75, unknown 62.4
2665 Male, age 74, both hemispheres 61.1
2583 Male, age 75, right hemisphere 59.9
Superior colliculus
nTPM: 56.2
2668 Female, age 75, unknown 66.4
2087 Female, age 72, unknown 65.5
1796 Male, age 53, unknown 64.1
2261 Male, age 18, unknown 60.6
1895 Male, age 76, right hemisphere 58.7
2587 Male, age 74, left hemisphere 57.2
1913 Female, age 42, unknown 50.3
1839 Male, age 51, unknown 48.6
1995 Male, age 72, unknown 47.2
2664 Male, age 75, both hemispheres 43.3
Ventral tegmental area
nTPM: 70.9
2410 Female, age 72, unknown 93.0
1915 Female, age 42, unknown 84.6
2218 Male, age 76, both hemispheres 76.4
2223 Female, age 72, unknown 62.1
1942 Male, age 51, unknown 59.5
2021 Male, age 53, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 101.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 101.2
Samples: 139

Max nTPM: 295.4
Min nTPM: 59.0
Std nTPM: 33.3
Median nTPM: 93.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 295.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 236.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 206.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 199.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 171.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 165.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 158.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 156.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 155.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 154.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 149.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.6
FF:10158-103A5 76 years, female 153.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 150.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 131.8
Samples: 4

Max nTPM: 165.1
Min nTPM: 107.8
Sample A Female 165.1
Sample B Female 107.8
Sample C Male 127.1
Sample D Male 127.0
Midbrain
nTPM: 150.5
Samples: 4

Max nTPM: 233.8
Min nTPM: 108.8
Sample A Female 233.8
Sample B Female 117.4
Sample C Male 141.9
Sample D Male 108.8
Periaqueductal gray
nTPM: 100.6
Samples: 3

Max nTPM: 110.6
Min nTPM: 90.7
Sample B Female 100.5
Sample C Male 110.6
Sample D Male 90.7
Superior colliculi
nTPM: 143.0
Samples: 4

Max nTPM: 163.0
Min nTPM: 119.0
Sample A Female 163.0
Sample B Female 119.0
Sample C Male 160.6
Sample D Male 129.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.6
Samples: 4

Max nTPM: 240.5
Min nTPM: 215.0
Sample A Male 240.5
Sample B Male 216.1
Sample C Female 215.0
Sample D Female 226.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.9
545090 Antisense, RP_040810_02_H09, Mouse strain C57BL/6J (56 days, male) 19.9

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