HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:90.5 nTPM
HPA Brain:87.3 nTPM
GTEx:90.5 nTPM
FANTOM5:92.2 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:109.2 nTPM
Allen mouse:14.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039242Antibody CAB032896
Glial cells LowMedium
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 87.3
Sample id Sample description nTPM
Hippocampus
nTPM: 87.3
1898 Male, age 80, left hemisphere 92.3
2621 Female, age 67, right hemisphere 90.0
1855 Male, age 76, left hemisphere 87.0
1911 Female, age 85, right hemisphere 86.5
2529 Female, age 94, left hemisphere 85.8
2148 Female, age 91, left hemisphere 82.2
Dentate gyrus
nTPM: 83.4
2010 Male, age 76, both hemispheres 93.5
2530 Female, age 94, left hemisphere 91.6
2528 Male, age 74, both hemispheres 81.9
1927 Female, age 91, both hemispheres 80.4
2246 Female, age 85, both hemispheres 79.7
2531 Female, age 67, both hemispheres 73.3
Entorhinal gyrus
nTPM: 79.5
2117 Female, age 91, right hemisphere 85.7
1938 Female, age 85, left hemisphere 85.4
1787 Male, age 76, left hemisphere 85.2
2764 Male, age 80, right hemisphere 77.0
2686 Male, age 75, right hemisphere 72.5
2613 Female, age 94, left hemisphere 71.0
Hippocampus, CA1
nTPM: 84.7
2749 Male, age 80, left hemisphere 97.5
1873 Female, age 85, both hemispheres 84.7
2082 Female, age 91, right hemisphere 83.3
2527 Male, age 74, both hemispheres 80.1
2045 Male, age 76, both hemispheres 78.1
Hippocampus, CA2
nTPM: 86.1
2249 Male, age 74, both hemispheres 98.6
1940 Female, age 85, left hemisphere 89.2
1963 Male, age 80, left hemisphere 88.2
1892 Male, age 76, both hemispheres 87.8
2113 Female, age 91, right hemisphere 79.3
2437 Female, age 94, left hemisphere 73.7
Hippocampus, CA3
nTPM: 83.4
2137 Male, age 80, left hemisphere 92.1
2436 Male, age 74, both hemispheres 89.0
1867 Male, age 76, both hemispheres 88.1
1891 Female, age 85, both hemispheres 86.8
2620 Female, age 94, left hemisphere 77.6
2861 Female, age 67, both hemispheres 66.9
Parahippocampal cortex
nTPM: 83.7
2245 Female, age 91, both hemispheres 93.3
2250 Female, age 67, right hemisphere 92.9
2018 Male, age 76, both hemispheres 89.6
2692 Male, age 74, both hemispheres 86.4
1933 Female, age 85, both hemispheres 86.1
1850 Male, age 80, both hemispheres 83.5
2532 Female, age 72, left hemisphere 81.4
1990 Female, age 91, right hemisphere 79.1
2622 Female, age 67, right hemisphere 75.1
2693 Female, age 94, both hemispheres 69.4
Perirhinal gyrus
nTPM: 86.7
1841 Female, age 85, right hemisphere 96.1
1847 Female, age 91, left hemisphere 94.1
1794 Male, age 80, right hemisphere 92.5
2848 Male, age 76, right hemisphere 79.4
2521 Female, age 94, right hemisphere 71.6
Subiculum
nTPM: 83.1
2042 Male, age 76, both hemispheres 97.7
1977 Female, age 85, both hemispheres 86.3
1901 Male, age 80, both hemispheres 84.7
2619 Male, age 74, both hemispheres 81.5
2729 Female, age 91, right hemisphere 74.8
2438 Female, age 94, left hemisphere 73.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 90.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 90.5
Samples: 197

Max nTPM: 172.9
Min nTPM: 48.4
Std nTPM: 22.5
Median nTPM: 85.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 172.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 164.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 162.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 155.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 154.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 150.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 149.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 149.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 147.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 145.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 144.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.2
FF:10153-102I9 76 years, female 97.2
FF:10169-103B7 60 years, female 87.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Subiculum
nTPM: 11.2
Samples: 4

Max nTPM: 15.6
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 15.6
Sample C Male 12.3
Sample D Male 13.0
Dorsal hippocampus
nTPM: 7.5
Samples: 4

Max nTPM: 13.7
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 8.8
Sample C Male 5.2
Sample D Male 13.7
Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 26.8
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 16.7
Sample C Male 11.1
Sample D Male 26.8
Ventral hippocampus
nTPM: 7.7
Samples: 4

Max nTPM: 15.2
Min nTPM: 1.4
Sample A Female 10.9
Sample B Female 15.2
Sample C Male 1.4
Sample D Male 3.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 109.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 93.1
Samples: 4

Max nTPM: 104.8
Min nTPM: 85.5
Sample A Male 85.5
Sample B Male 94.2
Sample C Female 104.8
Sample D Female 88.0
Hippocampal formation
nTPM: 109.2
Samples: 4

Max nTPM: 131.7
Min nTPM: 95.5
Sample A Male 107.6
Sample B Male 95.5
Sample C Female 131.7
Sample D Female 101.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.8
68910955 Antisense, RP_041208_02_A09, Mouse strain C57BL/6J (56 days, male) 14.8

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