HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:53.2 nTPM
HPA Brain:50.3 nTPM
GTEx:53.2 nTPM
FANTOM5:82.5 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:131.4 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037784
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.3
Sample id Sample description nTPM
Hippocampus
nTPM: 49.9
1855 Male, age 76, left hemisphere 58.8
1898 Male, age 80, left hemisphere 56.6
1911 Female, age 85, right hemisphere 51.5
2529 Female, age 94, left hemisphere 50.8
2148 Female, age 91, left hemisphere 41.1
2621 Female, age 67, right hemisphere 40.3
Dentate gyrus
nTPM: 44.5
2010 Male, age 76, both hemispheres 53.0
2530 Female, age 94, left hemisphere 48.9
2528 Male, age 74, both hemispheres 47.1
1927 Female, age 91, both hemispheres 45.2
2246 Female, age 85, both hemispheres 39.4
2531 Female, age 67, both hemispheres 33.2
Entorhinal gyrus
nTPM: 43.1
2117 Female, age 91, right hemisphere 51.6
1938 Female, age 85, left hemisphere 48.7
1787 Male, age 76, left hemisphere 42.3
2613 Female, age 94, left hemisphere 39.3
2686 Male, age 75, right hemisphere 39.0
2764 Male, age 80, right hemisphere 37.5
Hippocampus, CA1
nTPM: 50.3
2749 Male, age 80, left hemisphere 65.4
1873 Female, age 85, both hemispheres 54.2
2527 Male, age 74, both hemispheres 46.6
2045 Male, age 76, both hemispheres 44.0
2082 Female, age 91, right hemisphere 41.3
Hippocampus, CA2
nTPM: 47.8
1963 Male, age 80, left hemisphere 54.1
1892 Male, age 76, both hemispheres 51.8
2249 Male, age 74, both hemispheres 49.8
1940 Female, age 85, left hemisphere 45.0
2113 Female, age 91, right hemisphere 43.6
2437 Female, age 94, left hemisphere 42.4
Hippocampus, CA3
nTPM: 47.0
2137 Male, age 80, left hemisphere 55.8
1867 Male, age 76, both hemispheres 52.2
1891 Female, age 85, both hemispheres 51.5
2436 Male, age 74, both hemispheres 47.0
2861 Female, age 67, both hemispheres 38.3
2620 Female, age 94, left hemisphere 37.1
Parahippocampal cortex
nTPM: 43.6
2692 Male, age 74, both hemispheres 47.2
2250 Female, age 67, right hemisphere 46.9
1850 Male, age 80, both hemispheres 46.2
1933 Female, age 85, both hemispheres 45.2
2693 Female, age 94, both hemispheres 44.6
2245 Female, age 91, both hemispheres 42.9
2018 Male, age 76, both hemispheres 42.8
1990 Female, age 91, right hemisphere 42.0
2532 Female, age 72, left hemisphere 40.9
2622 Female, age 67, right hemisphere 37.5
Perirhinal gyrus
nTPM: 41.8
1841 Female, age 85, right hemisphere 44.7
1794 Male, age 80, right hemisphere 42.7
1847 Female, age 91, left hemisphere 42.6
2521 Female, age 94, right hemisphere 40.3
2848 Male, age 76, right hemisphere 38.6
Subiculum
nTPM: 48.1
2042 Male, age 76, both hemispheres 53.2
1901 Male, age 80, both hemispheres 52.9
2729 Female, age 91, right hemisphere 48.6
2438 Female, age 94, left hemisphere 46.0
1977 Female, age 85, both hemispheres 44.2
2619 Male, age 74, both hemispheres 43.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.2
Samples: 197

Max nTPM: 83.2
Min nTPM: 34.6
Std nTPM: 8.3
Median nTPM: 53.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 83.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 76.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 71.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 71.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 69.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 68.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 68.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 68.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 68.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 68.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 68.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 82.5
FF:10169-103B7 60 years, female 96.5
FF:10153-102I9 76 years, female 68.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Subiculum
nTPM: 22.5
Samples: 4

Max nTPM: 30.4
Min nTPM: 18.1
Sample A Female 30.4
Sample B Female 21.8
Sample C Male 18.1
Sample D Male 19.7
Dorsal hippocampus
nTPM: 22.7
Samples: 4

Max nTPM: 29.6
Min nTPM: 17.1
Sample A Female 29.6
Sample B Female 25.3
Sample C Male 17.1
Sample D Male 18.8
Entorhinal cortex
nTPM: 23.2
Samples: 4

Max nTPM: 27.9
Min nTPM: 17.3
Sample A Female 20.9
Sample B Female 27.9
Sample C Male 26.6
Sample D Male 17.3
Ventral hippocampus
nTPM: 21.7
Samples: 4

Max nTPM: 24.1
Min nTPM: 18.3
Sample A Female 24.1
Sample B Female 20.7
Sample C Male 23.7
Sample D Male 18.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 131.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 111.8
Samples: 4

Max nTPM: 118.4
Min nTPM: 104.4
Sample A Male 108.9
Sample B Male 104.4
Sample C Female 118.4
Sample D Female 115.3
Hippocampal formation
nTPM: 131.4
Samples: 4

Max nTPM: 145.9
Min nTPM: 125.2
Sample A Male 126.7
Sample B Male 127.7
Sample C Female 145.9
Sample D Female 125.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
631723 Antisense, RP_040907_01_C02, Mouse strain C57BL/6J (56 days, male) 3.3

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