MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.0 nTPM
HPA Brain:59.6 nTPM
GTEx:65.0 nTPM
FANTOM5:88.4 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:121.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.1
2586 Male, age 75, left hemisphere 69.7
1870 Female, age 42, unknown 61.4
2019 Male, age 18, unknown 60.7
2828 Female, age 72, unknown 58.0
1827 Male, age 72, unknown 57.8
2666 Male, age 74, left hemisphere 56.3
1830 Male, age 51, unknown 55.8
1833 Male, age 53, unknown 55.5
2411 Female, age 72, unknown 52.6
2219 Male, age 76, both hemispheres 43.3
Dorsal raphe nucleus
nTPM: 57.1
2016 Female, age 72, unknown 63.3
2750 Male, age 76, both hemispheres 58.2
1828 Male, age 53, unknown 56.3
2047 Male, age 72, unknown 54.4
2298 Female, age 72, unknown 53.3
Inferior colliculus
nTPM: 57.7
1890 Male, age 53, unknown 61.9
2097 Female, age 72, unknown 59.9
1848 Female, age 42, unknown 57.9
2849 Male, age 72, unknown 51.0
Median raphe nucleus
nTPM: 51.4
2220 Male, age 76, midline 51.4
Periaquaductal grey, anterior
nTPM: 59.4
1947 Male, age 18, unknown 64.0
2502 Female, age 75, unknown 62.2
1795 Male, age 51, unknown 52.0
Periaquaductal grey, dorsal
nTPM: 58.0
1840 Male, age 53, unknown 61.8
2464 Female, age 72, unknown 58.5
2850 Male, age 76, both hemispheres 57.9
1831 Male, age 72, unknown 53.8
Periaquaductal grey, lateral
nTPM: 52.5
2140 Male, age 76, both hemispheres 56.4
2053 Male, age 18, unknown 54.0
2272 Male, age 74, both hemispheres 47.0
Pretectal area
nTPM: 58.0
1815 Male, age 53, unknown 66.7
1817 Female, age 42, unknown 63.6
2007 Male, age 72, unknown 63.1
1816 Male, age 51, unknown 61.6
1944 Female, age 72, unknown 60.1
2667 Female, age 75, unknown 58.2
2316 Male, age 76, right hemisphere 55.7
2273 Male, age 74, both hemispheres 55.0
2224 Female, age 72, unknown 52.2
2825 Male, age 18, unknown 52.0
2407 Male, age 75, both hemispheres 49.6
Red nucleus
nTPM: 59.6
1821 Female, age 72, unknown 69.4
1954 Female, age 42, unknown 66.4
1904 Male, age 53, unknown 65.9
2503 Female, age 72, unknown 63.9
2823 Male, age 76, right hemisphere 61.7
1865 Male, age 51, unknown 61.2
2227 Male, age 72, unknown 58.1
2785 Male, age 18, unknown 58.0
2769 Male, age 72, unknown 56.8
2725 Female, age 75, unknown 53.2
2588 Male, age 74, left hemisphere 51.0
2584 Male, age 75, left hemisphere 49.9
Substantia nigra
nTPM: 57.8
2241 Male, age 72, unknown 64.3
2409 Female, age 72, unknown 63.4
2583 Male, age 75, right hemisphere 61.6
1851 Male, age 51, unknown 61.2
1889 Female, age 72, unknown 59.9
1916 Female, age 42, unknown 59.1
2699 Male, age 18, unknown 55.2
2590 Female, age 75, unknown 54.9
2665 Male, age 74, both hemispheres 51.1
1941 Male, age 53, unknown 46.9
Superior colliculus
nTPM: 58.2
1913 Female, age 42, unknown 64.6
2668 Female, age 75, unknown 63.8
1995 Male, age 72, unknown 63.2
2664 Male, age 75, both hemispheres 61.6
2087 Female, age 72, unknown 59.4
2261 Male, age 18, unknown 57.3
2587 Male, age 74, left hemisphere 56.6
1839 Male, age 51, unknown 55.5
1796 Male, age 53, unknown 51.2
1895 Male, age 76, right hemisphere 48.3
Ventral tegmental area
nTPM: 54.6
1942 Male, age 51, unknown 56.3
2223 Female, age 72, unknown 55.4
1915 Female, age 42, unknown 54.6
2410 Female, age 72, unknown 54.3
2218 Male, age 76, both hemispheres 53.8
2021 Male, age 53, unknown 53.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.0
Samples: 139

Max nTPM: 140.2
Min nTPM: 34.7
Std nTPM: 16.8
Median nTPM: 63.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 140.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 132.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 115.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 102.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 101.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 101.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 99.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 94.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 94.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 90.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.4
FF:10158-103A5 76 years, female 88.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 35.7
Min nTPM: 16.2
Sample A Female 35.7
Sample B Female 21.6
Sample C Male 20.5
Sample D Male 16.2
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 34.6
Min nTPM: 18.9
Sample A Female 34.6
Sample B Female 18.9
Sample C Male 26.0
Sample D Male 24.0
Periaqueductal gray
nTPM: 19.7
Samples: 3

Max nTPM: 20.3
Min nTPM: 18.8
Sample B Female 20.3
Sample C Male 20.0
Sample D Male 18.8
Superior colliculi
nTPM: 22.2
Samples: 4

Max nTPM: 30.9
Min nTPM: 16.9
Sample A Female 30.9
Sample B Female 16.9
Sample C Male 20.3
Sample D Male 20.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.2
Samples: 4

Max nTPM: 123.8
Min nTPM: 116.6
Sample A Male 116.6
Sample B Male 122.5
Sample C Female 121.9
Sample D Female 123.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
631723 Antisense, RP_040907_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3

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