MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.0 nTPM
HPA Brain:19.1 nTPM
GTEx:22.0 nTPM
FANTOM5:50.5 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:23.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.1
1830 Male, age 51, unknown 20.6
1833 Male, age 53, unknown 20.4
1870 Female, age 42, unknown 19.6
2586 Male, age 75, left hemisphere 19.0
2411 Female, age 72, unknown 18.5
2666 Male, age 74, left hemisphere 17.9
2219 Male, age 76, both hemispheres 17.7
2019 Male, age 18, unknown 17.5
1827 Male, age 72, unknown 16.5
2828 Female, age 72, unknown 13.8
Dorsal raphe nucleus
nTPM: 17.2
2016 Female, age 72, unknown 19.6
2750 Male, age 76, both hemispheres 18.7
1828 Male, age 53, unknown 17.3
2047 Male, age 72, unknown 17.3
2298 Female, age 72, unknown 13.4
Inferior colliculus
nTPM: 19.1
1848 Female, age 42, unknown 21.7
2849 Male, age 72, unknown 19.2
1890 Male, age 53, unknown 18.3
2097 Female, age 72, unknown 17.2
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Periaquaductal grey, anterior
nTPM: 18.2
1947 Male, age 18, unknown 19.8
2502 Female, age 75, unknown 18.1
1795 Male, age 51, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 18.7
2464 Female, age 72, unknown 19.9
2850 Male, age 76, both hemispheres 18.7
1831 Male, age 72, unknown 18.5
1840 Male, age 53, unknown 17.9
Periaquaductal grey, lateral
nTPM: 17.9
2053 Male, age 18, unknown 19.8
2140 Male, age 76, both hemispheres 17.4
2272 Male, age 74, both hemispheres 16.6
Pretectal area
nTPM: 18.7
1944 Female, age 72, unknown 21.0
2007 Male, age 72, unknown 20.3
2407 Male, age 75, both hemispheres 20.1
2224 Female, age 72, unknown 19.7
2825 Male, age 18, unknown 19.2
1817 Female, age 42, unknown 18.7
2316 Male, age 76, right hemisphere 17.6
2667 Female, age 75, unknown 17.4
2273 Male, age 74, both hemispheres 17.3
1816 Male, age 51, unknown 17.0
1815 Male, age 53, unknown 16.9
Red nucleus
nTPM: 18.8
2584 Male, age 75, left hemisphere 21.3
2823 Male, age 76, right hemisphere 20.8
2785 Male, age 18, unknown 19.9
1954 Female, age 42, unknown 19.5
1821 Female, age 72, unknown 19.3
2725 Female, age 75, unknown 19.3
1865 Male, age 51, unknown 18.9
2588 Male, age 74, left hemisphere 18.3
2503 Female, age 72, unknown 17.6
2769 Male, age 72, unknown 17.5
2227 Male, age 72, unknown 17.1
1904 Male, age 53, unknown 16.9
Substantia nigra
nTPM: 17.9
2241 Male, age 72, unknown 23.7
2409 Female, age 72, unknown 21.0
1941 Male, age 53, unknown 19.3
2583 Male, age 75, right hemisphere 17.7
2590 Female, age 75, unknown 17.6
2699 Male, age 18, unknown 17.6
1889 Female, age 72, unknown 16.7
1851 Male, age 51, unknown 16.0
2665 Male, age 74, both hemispheres 14.9
1916 Female, age 42, unknown 14.7
Superior colliculus
nTPM: 17.5
1839 Male, age 51, unknown 20.7
1895 Male, age 76, right hemisphere 19.7
1913 Female, age 42, unknown 19.1
2668 Female, age 75, unknown 18.4
2587 Male, age 74, left hemisphere 17.9
2087 Female, age 72, unknown 17.2
1796 Male, age 53, unknown 16.7
2664 Male, age 75, both hemispheres 16.3
1995 Male, age 72, unknown 15.3
2261 Male, age 18, unknown 13.7
Ventral tegmental area
nTPM: 16.8
2021 Male, age 53, unknown 18.6
2223 Female, age 72, unknown 18.3
1915 Female, age 42, unknown 16.9
1942 Male, age 51, unknown 16.2
2218 Male, age 76, both hemispheres 16.0
2410 Female, age 72, unknown 14.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.0
Samples: 139

Max nTPM: 46.3
Min nTPM: 8.9
Std nTPM: 5.6
Median nTPM: 21.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 39.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 36.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 36.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 34.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 33.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 31.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 31.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 30.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 30.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.5
FF:10158-103A5 76 years, female 50.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.2
Samples: 4

Max nTPM: 27.2
Min nTPM: 18.2
Sample A Female 18.2
Sample B Female 25.6
Sample C Male 21.7
Sample D Male 27.2
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 25.8
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 23.2
Sample C Male 25.8
Sample D Male 22.9
Periaqueductal gray
nTPM: 23.4
Samples: 3

Max nTPM: 25.0
Min nTPM: 20.4
Sample B Female 25.0
Sample C Male 20.4
Sample D Male 24.9
Superior colliculi
nTPM: 21.8
Samples: 4

Max nTPM: 23.9
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 22.9
Sample C Male 23.9
Sample D Male 22.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 23.9
Min nTPM: 21.1
Sample A Male 23.5
Sample B Male 21.1
Sample C Female 23.8
Sample D Female 23.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70305389 Antisense, RP_050609_04_A12, Mouse strain C57BL/6J (56 days, male) 0.2

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