MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:562.1 nTPM
HPA Brain:306.9 nTPM
GTEx:562.1 nTPM
FANTOM5:226.8 Scaled Tags Per Million
Pig:729.8 nTPM
Mouse:488.7 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 306.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 253.6
2019 Male, age 18, unknown 333.9
2586 Male, age 75, left hemisphere 283.6
2411 Female, age 72, unknown 271.9
1827 Male, age 72, unknown 271.0
2828 Female, age 72, unknown 261.8
2666 Male, age 74, left hemisphere 235.1
2219 Male, age 76, both hemispheres 233.5
1870 Female, age 42, unknown 231.7
1833 Male, age 53, unknown 217.8
1830 Male, age 51, unknown 195.7
Dorsal raphe nucleus
nTPM: 281.7
2298 Female, age 72, unknown 371.2
1828 Male, age 53, unknown 301.8
2047 Male, age 72, unknown 270.5
2750 Male, age 76, both hemispheres 238.6
2016 Female, age 72, unknown 226.5
Inferior colliculus
nTPM: 275.0
2097 Female, age 72, unknown 353.6
1890 Male, age 53, unknown 309.9
1848 Female, age 42, unknown 237.5
2849 Male, age 72, unknown 199.2
Median raphe nucleus
nTPM: 218.4
2220 Male, age 76, midline 218.4
Periaquaductal grey, anterior
nTPM: 268.3
2502 Female, age 75, unknown 280.7
1947 Male, age 18, unknown 262.4
1795 Male, age 51, unknown 261.8
Periaquaductal grey, dorsal
nTPM: 224.8
1831 Male, age 72, unknown 230.2
1840 Male, age 53, unknown 228.1
2850 Male, age 76, both hemispheres 224.7
2464 Female, age 72, unknown 216.1
Periaquaductal grey, lateral
nTPM: 221.7
2272 Male, age 74, both hemispheres 228.3
2053 Male, age 18, unknown 221.6
2140 Male, age 76, both hemispheres 215.2
Pretectal area
nTPM: 303.7
2007 Male, age 72, unknown 431.5
1816 Male, age 51, unknown 410.8
1817 Female, age 42, unknown 389.1
1815 Male, age 53, unknown 327.1
2667 Female, age 75, unknown 320.4
1944 Female, age 72, unknown 318.1
2273 Male, age 74, both hemispheres 264.5
2224 Female, age 72, unknown 248.7
2316 Male, age 76, right hemisphere 245.9
2825 Male, age 18, unknown 219.9
2407 Male, age 75, both hemispheres 164.4
Red nucleus
nTPM: 290.9
1821 Female, age 72, unknown 415.9
2785 Male, age 18, unknown 312.2
2503 Female, age 72, unknown 310.7
2588 Male, age 74, left hemisphere 296.9
2725 Female, age 75, unknown 286.1
2823 Male, age 76, right hemisphere 284.9
1904 Male, age 53, unknown 282.7
2769 Male, age 72, unknown 281.5
2227 Male, age 72, unknown 280.7
1954 Female, age 42, unknown 265.3
1865 Male, age 51, unknown 264.9
2584 Male, age 75, left hemisphere 208.6
Substantia nigra
nTPM: 306.9
1916 Female, age 42, unknown 411.1
1851 Male, age 51, unknown 383.6
1889 Female, age 72, unknown 343.4
2665 Male, age 74, both hemispheres 338.4
1941 Male, age 53, unknown 294.8
2241 Male, age 72, unknown 268.6
2699 Male, age 18, unknown 267.5
2590 Female, age 75, unknown 264.3
2409 Female, age 72, unknown 259.6
2583 Male, age 75, right hemisphere 237.5
Superior colliculus
nTPM: 258.1
2087 Female, age 72, unknown 292.9
1796 Male, age 53, unknown 284.6
2261 Male, age 18, unknown 273.2
2587 Male, age 74, left hemisphere 271.8
1895 Male, age 76, right hemisphere 261.7
2668 Female, age 75, unknown 257.6
1995 Male, age 72, unknown 255.8
1913 Female, age 42, unknown 241.2
1839 Male, age 51, unknown 227.1
2664 Male, age 75, both hemispheres 214.8
Ventral tegmental area
nTPM: 279.4
1915 Female, age 42, unknown 353.7
2410 Female, age 72, unknown 319.7
2223 Female, age 72, unknown 274.7
2218 Male, age 76, both hemispheres 269.5
1942 Male, age 51, unknown 249.1
2021 Male, age 53, unknown 209.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 562.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 562.1
Samples: 139

Max nTPM: 1115.8
Min nTPM: 241.5
Std nTPM: 150.1
Median nTPM: 551.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1115.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 912.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 901.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 891.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 860.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 858.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 847.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 835.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 809.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 808.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 808.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 226.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 226.8
FF:10158-103A5 76 years, female 226.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 729.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 588.4
Samples: 4

Max nTPM: 888.0
Min nTPM: 404.0
Sample A Female 888.0
Sample B Female 491.3
Sample C Male 570.1
Sample D Male 404.0
Midbrain
nTPM: 648.7
Samples: 4

Max nTPM: 758.7
Min nTPM: 556.2
Sample A Female 693.9
Sample B Female 556.2
Sample C Male 758.7
Sample D Male 586.0
Periaqueductal gray
nTPM: 476.0
Samples: 3

Max nTPM: 526.0
Min nTPM: 418.5
Sample B Female 483.5
Sample C Male 526.0
Sample D Male 418.5
Superior colliculi
nTPM: 729.8
Samples: 4

Max nTPM: 905.1
Min nTPM: 579.6
Sample A Female 905.1
Sample B Female 638.6
Sample C Male 795.7
Sample D Male 579.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 488.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 488.7
Samples: 4

Max nTPM: 535.4
Min nTPM: 460.8
Sample A Male 535.4
Sample B Male 486.9
Sample C Female 460.8
Sample D Female 471.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
69568986 Antisense, RP_050426_03_C02, Mouse strain C57BL/6J (56 days, male) 5.3

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