MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:208.6 nTPM
HPA Brain:298.9 nTPM
GTEx:208.6 nTPM
FANTOM5:336.6 Scaled Tags Per Million
Pig:82.8 nTPM
Mouse:48.4 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 298.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 232.1
1830 Male, age 51, unknown 298.5
2411 Female, age 72, unknown 293.9
1870 Female, age 42, unknown 272.9
1833 Male, age 53, unknown 271.1
2019 Male, age 18, unknown 254.7
2828 Female, age 72, unknown 206.0
2666 Male, age 74, left hemisphere 203.3
2586 Male, age 75, left hemisphere 191.4
1827 Male, age 72, unknown 176.1
2219 Male, age 76, both hemispheres 153.4
Dorsal raphe nucleus
nTPM: 203.0
2750 Male, age 76, both hemispheres 332.3
2016 Female, age 72, unknown 200.2
1828 Male, age 53, unknown 184.7
2298 Female, age 72, unknown 150.4
2047 Male, age 72, unknown 147.2
Inferior colliculus
nTPM: 147.4
1890 Male, age 53, unknown 158.7
1848 Female, age 42, unknown 146.5
2849 Male, age 72, unknown 145.0
2097 Female, age 72, unknown 139.3
Median raphe nucleus
nTPM: 180.3
2220 Male, age 76, midline 180.3
Periaquaductal grey, anterior
nTPM: 165.6
2502 Female, age 75, unknown 194.8
1947 Male, age 18, unknown 160.6
1795 Male, age 51, unknown 141.3
Periaquaductal grey, dorsal
nTPM: 144.1
2464 Female, age 72, unknown 197.6
1831 Male, age 72, unknown 154.2
1840 Male, age 53, unknown 113.0
2850 Male, age 76, both hemispheres 111.4
Periaquaductal grey, lateral
nTPM: 149.3
2053 Male, age 18, unknown 180.8
2272 Male, age 74, both hemispheres 152.8
2140 Male, age 76, both hemispheres 114.4
Pretectal area
nTPM: 162.7
2316 Male, age 76, right hemisphere 249.2
1815 Male, age 53, unknown 197.7
2407 Male, age 75, both hemispheres 190.6
2825 Male, age 18, unknown 178.2
1817 Female, age 42, unknown 168.1
2273 Male, age 74, both hemispheres 160.5
2224 Female, age 72, unknown 152.0
2007 Male, age 72, unknown 151.9
2667 Female, age 75, unknown 135.9
1816 Male, age 51, unknown 107.2
1944 Female, age 72, unknown 98.9
Red nucleus
nTPM: 298.9
2823 Male, age 76, right hemisphere 350.5
1865 Male, age 51, unknown 349.9
1821 Female, age 72, unknown 339.3
1904 Male, age 53, unknown 337.9
2503 Female, age 72, unknown 320.5
2769 Male, age 72, unknown 310.1
2227 Male, age 72, unknown 308.7
2588 Male, age 74, left hemisphere 305.0
1954 Female, age 42, unknown 272.1
2785 Male, age 18, unknown 265.9
2725 Female, age 75, unknown 222.1
2584 Male, age 75, left hemisphere 205.5
Substantia nigra
nTPM: 193.3
2590 Female, age 75, unknown 232.6
1851 Male, age 51, unknown 226.4
2409 Female, age 72, unknown 223.8
2241 Male, age 72, unknown 202.9
2699 Male, age 18, unknown 199.9
2583 Male, age 75, right hemisphere 186.0
1889 Female, age 72, unknown 178.0
2665 Male, age 74, both hemispheres 175.3
1941 Male, age 53, unknown 157.7
1916 Female, age 42, unknown 150.1
Superior colliculus
nTPM: 205.9
1913 Female, age 42, unknown 302.3
1995 Male, age 72, unknown 275.4
2587 Male, age 74, left hemisphere 240.8
1895 Male, age 76, right hemisphere 237.9
2668 Female, age 75, unknown 212.2
1839 Male, age 51, unknown 194.2
1796 Male, age 53, unknown 167.5
2664 Male, age 75, both hemispheres 161.2
2261 Male, age 18, unknown 137.8
2087 Female, age 72, unknown 129.3
Ventral tegmental area
nTPM: 212.7
2223 Female, age 72, unknown 256.7
2410 Female, age 72, unknown 251.1
2021 Male, age 53, unknown 211.9
1942 Male, age 51, unknown 198.4
1915 Female, age 42, unknown 185.0
2218 Male, age 76, both hemispheres 173.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 208.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 208.6
Samples: 139

Max nTPM: 575.4
Min nTPM: 62.8
Std nTPM: 85.0
Median nTPM: 183.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 575.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 452.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 437.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 397.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 378.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 364.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 360.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 348.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 345.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 341.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 328.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 336.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 336.6
FF:10158-103A5 76 years, female 336.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.9
Samples: 4

Max nTPM: 83.1
Min nTPM: 66.0
Sample A Female 80.1
Sample B Female 74.3
Sample C Male 66.0
Sample D Male 83.1
Midbrain
nTPM: 82.8
Samples: 4

Max nTPM: 149.6
Min nTPM: 38.9
Sample A Female 149.6
Sample B Female 87.2
Sample C Male 55.6
Sample D Male 38.9
Periaqueductal gray
nTPM: 61.4
Samples: 3

Max nTPM: 73.9
Min nTPM: 54.5
Sample B Female 73.9
Sample C Male 54.5
Sample D Male 55.8
Superior colliculi
nTPM: 59.8
Samples: 4

Max nTPM: 66.1
Min nTPM: 48.6
Sample A Female 59.2
Sample B Female 48.6
Sample C Male 66.1
Sample D Male 65.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 53.3
Min nTPM: 43.6
Sample A Male 50.4
Sample B Male 43.6
Sample C Female 46.4
Sample D Female 53.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
112650769 Antisense, RP_071128_04_A08, Mouse strain C57BL/6J (56 days, male) 3.7
2302 Antisense, RP_040604_02_B07, Mouse strain C57BL/6J (56 days, male) 1.2

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