MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.6 nTPM
HPA Brain:191.6 nTPM
GTEx:100.6 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:132.6 nTPM
Mouse:126.2 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 191.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.0
2586 Male, age 75, left hemisphere 280.9
2019 Male, age 18, unknown 181.8
2666 Male, age 74, left hemisphere 158.6
2828 Female, age 72, unknown 147.6
2219 Male, age 76, both hemispheres 143.1
2411 Female, age 72, unknown 130.9
1827 Male, age 72, unknown 127.9
1870 Female, age 42, unknown 126.2
1830 Male, age 51, unknown 124.0
1833 Male, age 53, unknown 119.2
Dorsal raphe nucleus
nTPM: 133.5
2047 Male, age 72, unknown 162.1
2750 Male, age 76, both hemispheres 155.5
1828 Male, age 53, unknown 126.2
2016 Female, age 72, unknown 112.8
2298 Female, age 72, unknown 111.0
Inferior colliculus
nTPM: 113.1
1890 Male, age 53, unknown 127.1
1848 Female, age 42, unknown 117.8
2097 Female, age 72, unknown 108.6
2849 Male, age 72, unknown 98.9
Median raphe nucleus
nTPM: 154.2
2220 Male, age 76, midline 154.2
Periaquaductal grey, anterior
nTPM: 141.2
1947 Male, age 18, unknown 143.2
1795 Male, age 51, unknown 143.0
2502 Female, age 75, unknown 137.3
Periaquaductal grey, dorsal
nTPM: 98.3
1831 Male, age 72, unknown 106.4
1840 Male, age 53, unknown 102.9
2464 Female, age 72, unknown 92.1
2850 Male, age 76, both hemispheres 91.8
Periaquaductal grey, lateral
nTPM: 84.7
2053 Male, age 18, unknown 91.7
2140 Male, age 76, both hemispheres 82.2
2272 Male, age 74, both hemispheres 80.2
Pretectal area
nTPM: 137.2
2007 Male, age 72, unknown 194.0
1817 Female, age 42, unknown 180.5
1815 Male, age 53, unknown 165.9
1944 Female, age 72, unknown 165.3
1816 Male, age 51, unknown 159.3
2407 Male, age 75, both hemispheres 148.7
2667 Female, age 75, unknown 125.2
2825 Male, age 18, unknown 103.5
2224 Female, age 72, unknown 97.4
2316 Male, age 76, right hemisphere 86.5
2273 Male, age 74, both hemispheres 82.9
Red nucleus
nTPM: 150.1
2584 Male, age 75, left hemisphere 226.5
2785 Male, age 18, unknown 178.3
2588 Male, age 74, left hemisphere 174.6
1821 Female, age 72, unknown 156.5
1904 Male, age 53, unknown 146.5
1865 Male, age 51, unknown 145.0
1954 Female, age 42, unknown 140.8
2769 Male, age 72, unknown 136.2
2503 Female, age 72, unknown 135.7
2227 Male, age 72, unknown 131.1
2725 Female, age 75, unknown 126.9
2823 Male, age 76, right hemisphere 103.3
Substantia nigra
nTPM: 191.6
2583 Male, age 75, right hemisphere 235.8
1916 Female, age 42, unknown 226.0
1851 Male, age 51, unknown 220.6
2665 Male, age 74, both hemispheres 220.4
1889 Female, age 72, unknown 177.9
2590 Female, age 75, unknown 175.9
1941 Male, age 53, unknown 174.3
2241 Male, age 72, unknown 169.8
2409 Female, age 72, unknown 159.1
2699 Male, age 18, unknown 156.3
Superior colliculus
nTPM: 131.9
2664 Male, age 75, both hemispheres 194.5
2668 Female, age 75, unknown 174.4
1796 Male, age 53, unknown 138.6
2087 Female, age 72, unknown 138.1
2261 Male, age 18, unknown 122.5
2587 Male, age 74, left hemisphere 119.3
1995 Male, age 72, unknown 118.1
1839 Male, age 51, unknown 113.4
1913 Female, age 42, unknown 105.1
1895 Male, age 76, right hemisphere 95.3
Ventral tegmental area
nTPM: 166.0
2223 Female, age 72, unknown 185.1
2410 Female, age 72, unknown 171.6
2218 Male, age 76, both hemispheres 168.8
1915 Female, age 42, unknown 161.9
1942 Male, age 51, unknown 160.9
2021 Male, age 53, unknown 147.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.6
Samples: 139

Max nTPM: 167.5
Min nTPM: 52.5
Std nTPM: 19.1
Median nTPM: 99.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 167.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 161.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 151.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 151.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 144.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 138.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 129.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 127.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 127.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 127.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 125.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 132.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 123.2
Samples: 4

Max nTPM: 150.4
Min nTPM: 95.2
Sample A Female 150.4
Sample B Female 95.2
Sample C Male 140.5
Sample D Male 106.8
Midbrain
nTPM: 132.6
Samples: 4

Max nTPM: 164.6
Min nTPM: 112.1
Sample A Female 136.9
Sample B Female 112.1
Sample C Male 164.6
Sample D Male 116.8
Periaqueductal gray
nTPM: 85.7
Samples: 3

Max nTPM: 93.7
Min nTPM: 75.2
Sample B Female 93.7
Sample C Male 88.2
Sample D Male 75.2
Superior colliculi
nTPM: 115.1
Samples: 4

Max nTPM: 132.9
Min nTPM: 80.3
Sample A Female 123.7
Sample B Female 80.3
Sample C Male 132.9
Sample D Male 123.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.2
Samples: 4

Max nTPM: 131.8
Min nTPM: 123.3
Sample A Male 125.9
Sample B Male 123.3
Sample C Female 123.8
Sample D Female 131.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
71764320 Antisense, RP_050921_03_E08, Mouse strain C57BL/6J (56 days, male) 2.9

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