HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:37.6 nTPM
HPA Brain:53.1 nTPM
GTEx:37.6 nTPM
FANTOM5:119.6 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:64.0 nTPM
Allen mouse:8.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041802Antibody HPA054532
Glial cells LowNot detected
Neuronal cells MediumLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.1
Sample id Sample description nTPM
Hippocampus
nTPM: 50.0
2529 Female, age 94, left hemisphere 58.4
1911 Female, age 85, right hemisphere 53.7
1898 Male, age 80, left hemisphere 51.6
2148 Female, age 91, left hemisphere 47.0
2621 Female, age 67, right hemisphere 45.1
1855 Male, age 76, left hemisphere 44.5
Dentate gyrus
nTPM: 45.3
2010 Male, age 76, both hemispheres 49.4
2246 Female, age 85, both hemispheres 46.2
2531 Female, age 67, both hemispheres 45.0
1927 Female, age 91, both hemispheres 44.7
2528 Male, age 74, both hemispheres 43.3
2530 Female, age 94, left hemisphere 42.9
Entorhinal gyrus
nTPM: 45.8
2117 Female, age 91, right hemisphere 54.5
2764 Male, age 80, right hemisphere 47.6
1938 Female, age 85, left hemisphere 46.1
1787 Male, age 76, left hemisphere 44.3
2686 Male, age 75, right hemisphere 42.1
2613 Female, age 94, left hemisphere 39.9
Hippocampus, CA1
nTPM: 49.0
2749 Male, age 80, left hemisphere 59.1
1873 Female, age 85, both hemispheres 48.7
2045 Male, age 76, both hemispheres 47.8
2527 Male, age 74, both hemispheres 44.8
2082 Female, age 91, right hemisphere 44.6
Hippocampus, CA2
nTPM: 50.3
1963 Male, age 80, left hemisphere 55.7
2437 Female, age 94, left hemisphere 52.9
2249 Male, age 74, both hemispheres 51.7
1940 Female, age 85, left hemisphere 47.5
1892 Male, age 76, both hemispheres 47.3
2113 Female, age 91, right hemisphere 47.0
Hippocampus, CA3
nTPM: 47.8
2137 Male, age 80, left hemisphere 56.2
1891 Female, age 85, both hemispheres 55.6
1867 Male, age 76, both hemispheres 52.9
2436 Male, age 74, both hemispheres 49.3
2861 Female, age 67, both hemispheres 38.8
2620 Female, age 94, left hemisphere 33.9
Parahippocampal cortex
nTPM: 47.2
2018 Male, age 76, both hemispheres 53.6
2622 Female, age 67, right hemisphere 50.0
2692 Male, age 74, both hemispheres 49.6
1850 Male, age 80, both hemispheres 48.4
1933 Female, age 85, both hemispheres 48.1
1990 Female, age 91, right hemisphere 48.1
2245 Female, age 91, both hemispheres 47.4
2250 Female, age 67, right hemisphere 44.1
2693 Female, age 94, both hemispheres 41.5
2532 Female, age 72, left hemisphere 40.7
Perirhinal gyrus
nTPM: 43.9
1841 Female, age 85, right hemisphere 46.0
1794 Male, age 80, right hemisphere 45.8
2521 Female, age 94, right hemisphere 44.3
1847 Female, age 91, left hemisphere 42.0
2848 Male, age 76, right hemisphere 41.5
Subiculum
nTPM: 53.1
2438 Female, age 94, left hemisphere 65.9
1901 Male, age 80, both hemispheres 59.4
2042 Male, age 76, both hemispheres 57.3
2729 Female, age 91, right hemisphere 47.4
1977 Female, age 85, both hemispheres 46.5
2619 Male, age 74, both hemispheres 42.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.6
Samples: 197

Max nTPM: 70.3
Min nTPM: 18.2
Std nTPM: 7.7
Median nTPM: 37.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 70.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 67.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 59.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 57.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 54.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 53.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 53.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 52.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 51.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 49.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 49.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 119.6
FF:10169-103B7 60 years, female 130.8
FF:10153-102I9 76 years, female 108.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.6
Pig sample Sample description nTPM
Subiculum
nTPM: 36.4
Samples: 4

Max nTPM: 40.6
Min nTPM: 34.0
Sample A Female 40.6
Sample B Female 36.1
Sample C Male 34.0
Sample D Male 34.8
Dorsal hippocampus
nTPM: 45.6
Samples: 4

Max nTPM: 52.4
Min nTPM: 38.1
Sample A Female 52.4
Sample B Female 42.7
Sample C Male 49.2
Sample D Male 38.1
Entorhinal cortex
nTPM: 34.8
Samples: 4

Max nTPM: 40.3
Min nTPM: 29.1
Sample A Female 36.3
Sample B Female 40.3
Sample C Male 33.5
Sample D Male 29.1
Ventral hippocampus
nTPM: 41.7
Samples: 4

Max nTPM: 48.5
Min nTPM: 35.0
Sample A Female 39.3
Sample B Female 35.0
Sample C Male 48.5
Sample D Male 43.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 64.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.9
Samples: 4

Max nTPM: 60.9
Min nTPM: 50.7
Sample A Male 50.7
Sample B Male 57.4
Sample C Female 58.6
Sample D Female 60.9
Hippocampal formation
nTPM: 64.1
Samples: 4

Max nTPM: 66.4
Min nTPM: 60.9
Sample A Male 66.0
Sample B Male 62.9
Sample C Female 66.4
Sample D Female 60.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.9
76098327 Antisense, RP_060626_01_E11, Mouse strain C57BL/6J (56 days, male) 8.9

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