MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.3 nTPM
HPA Brain:64.1 nTPM
GTEx:44.3 nTPM
FANTOM5:152.7 Scaled Tags Per Million
Pig:61.6 nTPM
Mouse:55.1 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.5
2019 Male, age 18, unknown 62.9
1830 Male, age 51, unknown 62.4
2411 Female, age 72, unknown 62.4
1870 Female, age 42, unknown 61.9
1833 Male, age 53, unknown 58.6
1827 Male, age 72, unknown 55.1
2586 Male, age 75, left hemisphere 54.1
2828 Female, age 72, unknown 52.2
2666 Male, age 74, left hemisphere 49.2
2219 Male, age 76, both hemispheres 46.6
Dorsal raphe nucleus
nTPM: 54.5
2750 Male, age 76, both hemispheres 59.0
1828 Male, age 53, unknown 56.0
2016 Female, age 72, unknown 55.5
2047 Male, age 72, unknown 53.4
2298 Female, age 72, unknown 48.9
Inferior colliculus
nTPM: 52.9
1848 Female, age 42, unknown 56.5
1890 Male, age 53, unknown 52.4
2097 Female, age 72, unknown 52.3
2849 Male, age 72, unknown 50.3
Median raphe nucleus
nTPM: 56.0
2220 Male, age 76, midline 56.0
Periaquaductal grey, anterior
nTPM: 51.0
1947 Male, age 18, unknown 55.2
2502 Female, age 75, unknown 52.2
1795 Male, age 51, unknown 45.5
Periaquaductal grey, dorsal
nTPM: 52.0
2850 Male, age 76, both hemispheres 54.5
1840 Male, age 53, unknown 52.6
2464 Female, age 72, unknown 51.8
1831 Male, age 72, unknown 49.2
Periaquaductal grey, lateral
nTPM: 52.6
2140 Male, age 76, both hemispheres 57.7
2053 Male, age 18, unknown 52.7
2272 Male, age 74, both hemispheres 47.4
Pretectal area
nTPM: 53.3
1817 Female, age 42, unknown 57.2
1815 Male, age 53, unknown 57.0
2007 Male, age 72, unknown 56.3
2316 Male, age 76, right hemisphere 54.5
2825 Male, age 18, unknown 54.0
2273 Male, age 74, both hemispheres 53.7
2667 Female, age 75, unknown 53.4
1944 Female, age 72, unknown 51.9
1816 Male, age 51, unknown 50.1
2407 Male, age 75, both hemispheres 49.6
2224 Female, age 72, unknown 48.0
Red nucleus
nTPM: 63.2
1865 Male, age 51, unknown 74.2
1954 Female, age 42, unknown 68.6
1904 Male, age 53, unknown 68.0
2588 Male, age 74, left hemisphere 67.3
1821 Female, age 72, unknown 64.9
2503 Female, age 72, unknown 64.5
2769 Male, age 72, unknown 64.3
2823 Male, age 76, right hemisphere 62.1
2725 Female, age 75, unknown 60.5
2785 Male, age 18, unknown 59.5
2227 Male, age 72, unknown 58.1
2584 Male, age 75, left hemisphere 45.7
Substantia nigra
nTPM: 64.1
2409 Female, age 72, unknown 132.6
2590 Female, age 75, unknown 65.4
2241 Male, age 72, unknown 62.5
1851 Male, age 51, unknown 59.4
1916 Female, age 42, unknown 56.4
1889 Female, age 72, unknown 54.6
2699 Male, age 18, unknown 54.6
2665 Male, age 74, both hemispheres 53.8
1941 Male, age 53, unknown 53.6
2583 Male, age 75, right hemisphere 47.9
Superior colliculus
nTPM: 51.3
1913 Female, age 42, unknown 58.9
1995 Male, age 72, unknown 57.7
1895 Male, age 76, right hemisphere 54.3
1839 Male, age 51, unknown 52.5
2587 Male, age 74, left hemisphere 51.3
1796 Male, age 53, unknown 49.4
2261 Male, age 18, unknown 48.9
2087 Female, age 72, unknown 48.1
2668 Female, age 75, unknown 48.1
2664 Male, age 75, both hemispheres 44.2
Ventral tegmental area
nTPM: 57.2
2410 Female, age 72, unknown 63.6
2223 Female, age 72, unknown 63.0
1915 Female, age 42, unknown 57.9
2021 Male, age 53, unknown 54.1
2218 Male, age 76, both hemispheres 53.0
1942 Male, age 51, unknown 51.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.3
Samples: 139

Max nTPM: 69.9
Min nTPM: 26.4
Std nTPM: 8.4
Median nTPM: 43.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 69.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 68.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 67.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 63.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 61.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 61.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 58.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 57.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 57.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 57.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.7
FF:10158-103A5 76 years, female 152.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.9
Samples: 4

Max nTPM: 74.2
Min nTPM: 51.5
Sample A Female 61.3
Sample B Female 51.5
Sample C Male 52.6
Sample D Male 74.2
Midbrain
nTPM: 61.6
Samples: 4

Max nTPM: 95.7
Min nTPM: 44.2
Sample A Female 95.7
Sample B Female 59.8
Sample C Male 46.6
Sample D Male 44.2
Periaqueductal gray
nTPM: 52.8
Samples: 3

Max nTPM: 55.7
Min nTPM: 49.0
Sample B Female 55.7
Sample C Male 53.7
Sample D Male 49.0
Superior colliculi
nTPM: 55.8
Samples: 4

Max nTPM: 60.1
Min nTPM: 52.1
Sample A Female 60.1
Sample B Female 52.1
Sample C Male 55.6
Sample D Male 55.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 58.5
Min nTPM: 52.5
Sample A Male 52.5
Sample B Male 54.6
Sample C Female 58.5
Sample D Female 54.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
76098327 Antisense, RP_060626_01_E11, Mouse strain C57BL/6J (56 days, male) 4.3

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