MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:162.1 nTPM
HPA Brain:98.4 nTPM
GTEx:162.1 nTPM
FANTOM5:114.2 Scaled Tags Per Million
Pig:20.4 nTPM
Mouse:39.3 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.6
2586 Male, age 75, left hemisphere 110.0
2666 Male, age 74, left hemisphere 87.3
1827 Male, age 72, unknown 82.4
1870 Female, age 42, unknown 81.4
1833 Male, age 53, unknown 78.0
2219 Male, age 76, both hemispheres 77.4
2411 Female, age 72, unknown 74.9
2019 Male, age 18, unknown 73.7
2828 Female, age 72, unknown 73.2
1830 Male, age 51, unknown 67.3
Dorsal raphe nucleus
nTPM: 71.1
2750 Male, age 76, both hemispheres 76.2
1828 Male, age 53, unknown 74.0
2047 Male, age 72, unknown 69.9
2298 Female, age 72, unknown 68.9
2016 Female, age 72, unknown 66.5
Inferior colliculus
nTPM: 79.2
2849 Male, age 72, unknown 92.5
1848 Female, age 42, unknown 77.9
1890 Male, age 53, unknown 76.4
2097 Female, age 72, unknown 70.2
Median raphe nucleus
nTPM: 98.4
2220 Male, age 76, midline 98.4
Periaquaductal grey, anterior
nTPM: 85.2
2502 Female, age 75, unknown 92.2
1795 Male, age 51, unknown 85.3
1947 Male, age 18, unknown 78.2
Periaquaductal grey, dorsal
nTPM: 74.8
2850 Male, age 76, both hemispheres 80.3
1840 Male, age 53, unknown 78.7
2464 Female, age 72, unknown 74.6
1831 Male, age 72, unknown 65.5
Periaquaductal grey, lateral
nTPM: 67.3
2140 Male, age 76, both hemispheres 82.1
2053 Male, age 18, unknown 60.8
2272 Male, age 74, both hemispheres 58.9
Pretectal area
nTPM: 76.1
1816 Male, age 51, unknown 93.2
2007 Male, age 72, unknown 89.7
1817 Female, age 42, unknown 88.4
1944 Female, age 72, unknown 85.4
2825 Male, age 18, unknown 80.1
1815 Male, age 53, unknown 75.3
2667 Female, age 75, unknown 73.2
2407 Male, age 75, both hemispheres 70.1
2224 Female, age 72, unknown 64.7
2316 Male, age 76, right hemisphere 60.2
2273 Male, age 74, both hemispheres 56.8
Red nucleus
nTPM: 83.1
2503 Female, age 72, unknown 97.4
2785 Male, age 18, unknown 93.3
2584 Male, age 75, left hemisphere 93.0
2769 Male, age 72, unknown 87.7
2588 Male, age 74, left hemisphere 87.3
2725 Female, age 75, unknown 85.2
2227 Male, age 72, unknown 83.2
1865 Male, age 51, unknown 78.8
1954 Female, age 42, unknown 76.2
1821 Female, age 72, unknown 74.1
1904 Male, age 53, unknown 71.9
2823 Male, age 76, right hemisphere 69.6
Substantia nigra
nTPM: 74.8
1916 Female, age 42, unknown 99.7
2665 Male, age 74, both hemispheres 93.9
1941 Male, age 53, unknown 81.8
2699 Male, age 18, unknown 79.9
1889 Female, age 72, unknown 79.0
1851 Male, age 51, unknown 77.2
2583 Male, age 75, right hemisphere 70.9
2590 Female, age 75, unknown 60.1
2241 Male, age 72, unknown 60.0
2409 Female, age 72, unknown 45.0
Superior colliculus
nTPM: 76.8
2668 Female, age 75, unknown 85.5
1796 Male, age 53, unknown 83.6
2587 Male, age 74, left hemisphere 81.7
2087 Female, age 72, unknown 79.3
1895 Male, age 76, right hemisphere 76.9
1839 Male, age 51, unknown 75.7
2261 Male, age 18, unknown 75.2
1913 Female, age 42, unknown 70.7
2664 Male, age 75, both hemispheres 70.0
1995 Male, age 72, unknown 69.9
Ventral tegmental area
nTPM: 75.8
1915 Female, age 42, unknown 85.9
2218 Male, age 76, both hemispheres 84.5
2223 Female, age 72, unknown 80.1
1942 Male, age 51, unknown 72.2
2021 Male, age 53, unknown 68.1
2410 Female, age 72, unknown 63.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 162.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 162.1
Samples: 139

Max nTPM: 354.8
Min nTPM: 99.5
Std nTPM: 39.1
Median nTPM: 155.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 354.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 346.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 247.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 246.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 242.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 242.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 227.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 226.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 216.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 213.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 210.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.2
FF:10158-103A5 76 years, female 114.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.6
Samples: 4

Max nTPM: 21.2
Min nTPM: 15.2
Sample A Female 21.2
Sample B Female 18.4
Sample C Male 15.2
Sample D Male 19.7
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 26.2
Min nTPM: 13.8
Sample A Female 26.2
Sample B Female 21.3
Sample C Male 17.1
Sample D Male 13.8
Periaqueductal gray
nTPM: 16.6
Samples: 3

Max nTPM: 17.0
Min nTPM: 16.0
Sample B Female 16.9
Sample C Male 16.0
Sample D Male 17.0
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 21.8
Min nTPM: 18.6
Sample A Female 21.8
Sample B Female 20.7
Sample C Male 18.6
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.3
Samples: 4

Max nTPM: 44.4
Min nTPM: 33.8
Sample A Male 44.4
Sample B Male 39.0
Sample C Female 33.8
Sample D Female 40.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69262235 Antisense, RP_050301_01_G04, Mouse strain C57BL/6J (56 days, male) 0.8

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