MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:126.8 nTPM
HPA Brain:148.3 nTPM
GTEx:126.8 nTPM
FANTOM5:290.3 Scaled Tags Per Million
Mouse:61.8 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.4
2828 Female, age 72, unknown 170.0
1870 Female, age 42, unknown 160.8
2586 Male, age 75, left hemisphere 144.0
1830 Male, age 51, unknown 140.5
2411 Female, age 72, unknown 136.8
1833 Male, age 53, unknown 134.5
2666 Male, age 74, left hemisphere 127.4
1827 Male, age 72, unknown 120.8
2019 Male, age 18, unknown 119.2
2219 Male, age 76, both hemispheres 80.5
Dorsal raphe nucleus
nTPM: 147.1
2016 Female, age 72, unknown 175.3
1828 Male, age 53, unknown 149.5
2047 Male, age 72, unknown 144.5
2298 Female, age 72, unknown 141.9
2750 Male, age 76, both hemispheres 124.3
Inferior colliculus
nTPM: 127.2
1848 Female, age 42, unknown 134.4
2849 Male, age 72, unknown 126.3
1890 Male, age 53, unknown 126.1
2097 Female, age 72, unknown 122.1
Median raphe nucleus
nTPM: 116.8
2220 Male, age 76, midline 116.8
Periaquaductal grey, anterior
nTPM: 131.9
2502 Female, age 75, unknown 137.0
1795 Male, age 51, unknown 135.4
1947 Male, age 18, unknown 123.5
Periaquaductal grey, dorsal
nTPM: 143.3
1831 Male, age 72, unknown 151.4
2850 Male, age 76, both hemispheres 146.3
1840 Male, age 53, unknown 142.9
2464 Female, age 72, unknown 132.5
Periaquaductal grey, lateral
nTPM: 148.3
2140 Male, age 76, both hemispheres 162.2
2053 Male, age 18, unknown 153.3
2272 Male, age 74, both hemispheres 129.3
Pretectal area
nTPM: 125.4
2316 Male, age 76, right hemisphere 146.8
2273 Male, age 74, both hemispheres 146.4
2825 Male, age 18, unknown 142.8
2224 Female, age 72, unknown 134.4
2667 Female, age 75, unknown 128.7
1815 Male, age 53, unknown 125.1
1817 Female, age 42, unknown 122.5
1944 Female, age 72, unknown 116.6
2407 Male, age 75, both hemispheres 113.8
1816 Male, age 51, unknown 105.1
2007 Male, age 72, unknown 97.6
Red nucleus
nTPM: 146.7
1904 Male, age 53, unknown 167.9
1821 Female, age 72, unknown 167.1
1954 Female, age 42, unknown 165.9
2227 Male, age 72, unknown 159.5
2769 Male, age 72, unknown 154.5
2503 Female, age 72, unknown 152.3
1865 Male, age 51, unknown 151.0
2725 Female, age 75, unknown 143.8
2823 Male, age 76, right hemisphere 142.2
2588 Male, age 74, left hemisphere 131.7
2785 Male, age 18, unknown 118.5
2584 Male, age 75, left hemisphere 106.3
Substantia nigra
nTPM: 145.3
2699 Male, age 18, unknown 200.9
1916 Female, age 42, unknown 157.1
1851 Male, age 51, unknown 153.5
2409 Female, age 72, unknown 151.2
2665 Male, age 74, both hemispheres 150.7
2590 Female, age 75, unknown 148.7
2583 Male, age 75, right hemisphere 130.9
2241 Male, age 72, unknown 121.5
1889 Female, age 72, unknown 120.3
1941 Male, age 53, unknown 118.4
Superior colliculus
nTPM: 134.2
1995 Male, age 72, unknown 178.9
1913 Female, age 42, unknown 170.3
2587 Male, age 74, left hemisphere 135.8
2087 Female, age 72, unknown 133.6
1796 Male, age 53, unknown 129.3
1839 Male, age 51, unknown 129.0
2664 Male, age 75, both hemispheres 127.7
2668 Female, age 75, unknown 120.3
2261 Male, age 18, unknown 114.5
1895 Male, age 76, right hemisphere 102.8
Ventral tegmental area
nTPM: 145.3
1915 Female, age 42, unknown 150.4
2021 Male, age 53, unknown 149.6
2410 Female, age 72, unknown 147.2
2223 Female, age 72, unknown 144.8
1942 Male, age 51, unknown 144.7
2218 Male, age 76, both hemispheres 135.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 126.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.8
Samples: 139

Max nTPM: 325.5
Min nTPM: 24.9
Std nTPM: 49.1
Median nTPM: 116.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 325.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 298.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 266.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 260.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 255.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 245.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 229.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 220.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 217.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 205.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 202.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 290.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 290.3
FF:10158-103A5 76 years, female 290.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.7
Samples: 4

Max nTPM: 65.3
Min nTPM: 57.9
Sample A Male 65.3
Sample B Male 57.9
Sample C Female 61.9
Sample D Female 61.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
1956 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 2.0
1957 Antisense, RP_Baylor_253962, Mouse strain C57BL/6J (56 days, male) 1.5

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