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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:115.9 nTPM
HPA Brain:148.6 nTPM
GTEx:115.9 nTPM
FANTOM5:251.7 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 148.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 133.8
1981 Female, age 72, midline 170.6
2048 Male, age 55, midline 151.4
2816 Male, age 47, midline 121.7
2194 Female, age 79, both hemispheres 116.3
2565 Male, age 75, midline 109.1
Cervical spinal cord, dorsal horn
nTPM: 127.8
2173 Female, age 72, unknown 183.1
2296 Male, age 66, both hemispheres 145.0
2069 Male, age 47, both hemispheres 126.3
1877 Male, age 55, unknown 121.7
2721 Male, age 90, both hemispheres 110.9
2297 Male, age 75, both hemispheres 79.8
Cervical spinal cord, ventral horn
nTPM: 148.6
2098 Female, age 72, unknown 214.9
2809 Male, age 90, both hemispheres 197.6
2295 Male, age 66, both hemispheres 131.0
2480 Male, age 75, both hemispheres 127.1
2068 Male, age 55, unknown 116.8
2820 Female, age 79, both hemispheres 104.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 115.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 115.9
Samples: 159

Max nTPM: 206.1
Min nTPM: 53.8
Std nTPM: 22.8
Median nTPM: 113.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 206.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 187.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 172.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 165.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 163.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 163.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 162.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 157.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 155.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 152.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 152.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 152.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 150.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 146.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 145.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 144.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 142.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 140.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 139.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 139.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 138.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 137.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 137.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 136.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 136.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 135.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 135.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 134.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 133.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 133.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 132.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 132.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 132.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 131.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 130.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 130.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 129.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 129.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 129.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 129.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 128.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 127.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 126.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 126.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 126.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 126.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 126.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 125.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 125.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 124.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 123.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 122.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 122.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 122.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 122.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 122.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 122.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 120.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 120.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 119.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 118.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 118.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 118.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 118.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 117.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 117.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 117.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 116.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 116.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 116.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 116.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 116.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 115.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 114.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 114.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 114.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 113.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 113.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 113.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 113.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 113.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 112.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 112.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 112.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 112.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 112.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 112.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 111.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 111.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 111.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 111.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 110.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 110.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 110.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 110.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 110.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 109.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 109.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 108.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 108.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 108.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 108.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 108.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 107.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 107.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 107.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 107.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 106.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 105.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 105.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 104.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 104.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 104.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 104.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 104.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 104.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 104.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 103.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 103.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 102.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 100.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 100.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 99.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 99.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 99.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 99.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 99.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 98.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 98.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 98.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 97.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 97.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 97.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 95.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 95.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 94.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 93.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 93.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 93.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 92.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 92.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 90.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 88.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 87.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 86.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 82.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 81.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 78.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 77.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 75.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 74.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 71.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 70.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 58.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 53.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 251.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 251.7
FF:10181-103D1 60 years, female 262.2
FF:10159-103A6 76 years, female 241.2

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