MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA Brain:84.6 nTPM
GTEx:39.7 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:115.9 nTPM
Mouse:1.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.4
2828 Female, age 72, unknown 87.6
1827 Male, age 72, unknown 79.0
2219 Male, age 76, both hemispheres 78.6
1870 Female, age 42, unknown 72.8
2586 Male, age 75, left hemisphere 68.4
2666 Male, age 74, left hemisphere 66.6
1830 Male, age 51, unknown 65.7
1833 Male, age 53, unknown 65.0
2019 Male, age 18, unknown 62.4
2411 Female, age 72, unknown 58.3
Dorsal raphe nucleus
nTPM: 75.1
2298 Female, age 72, unknown 83.8
2750 Male, age 76, both hemispheres 80.6
2047 Male, age 72, unknown 75.1
2016 Female, age 72, unknown 71.0
1828 Male, age 53, unknown 65.0
Inferior colliculus
nTPM: 80.0
2097 Female, age 72, unknown 91.1
2849 Male, age 72, unknown 78.6
1848 Female, age 42, unknown 76.0
1890 Male, age 53, unknown 74.3
Median raphe nucleus
nTPM: 70.9
2220 Male, age 76, midline 70.9
Periaquaductal grey, anterior
nTPM: 84.6
2502 Female, age 75, unknown 88.8
1795 Male, age 51, unknown 84.2
1947 Male, age 18, unknown 80.9
Periaquaductal grey, dorsal
nTPM: 73.0
1831 Male, age 72, unknown 76.7
1840 Male, age 53, unknown 75.6
2850 Male, age 76, both hemispheres 72.6
2464 Female, age 72, unknown 67.2
Periaquaductal grey, lateral
nTPM: 83.3
2272 Male, age 74, both hemispheres 98.1
2140 Male, age 76, both hemispheres 78.8
2053 Male, age 18, unknown 72.9
Pretectal area
nTPM: 76.2
2273 Male, age 74, both hemispheres 91.4
2224 Female, age 72, unknown 89.9
2316 Male, age 76, right hemisphere 86.5
2825 Male, age 18, unknown 80.0
2667 Female, age 75, unknown 78.5
2007 Male, age 72, unknown 73.9
2407 Male, age 75, both hemispheres 71.1
1816 Male, age 51, unknown 68.6
1817 Female, age 42, unknown 66.7
1815 Male, age 53, unknown 66.2
1944 Female, age 72, unknown 65.3
Red nucleus
nTPM: 67.9
2769 Male, age 72, unknown 76.6
2785 Male, age 18, unknown 74.9
2503 Female, age 72, unknown 73.5
2227 Male, age 72, unknown 73.1
2584 Male, age 75, left hemisphere 69.5
1954 Female, age 42, unknown 68.6
1904 Male, age 53, unknown 68.3
1865 Male, age 51, unknown 67.3
2725 Female, age 75, unknown 62.8
2588 Male, age 74, left hemisphere 62.2
2823 Male, age 76, right hemisphere 60.6
1821 Female, age 72, unknown 57.8
Substantia nigra
nTPM: 60.8
1941 Male, age 53, unknown 73.6
2665 Male, age 74, both hemispheres 66.0
2590 Female, age 75, unknown 64.4
1916 Female, age 42, unknown 64.1
1851 Male, age 51, unknown 63.6
1889 Female, age 72, unknown 63.3
2699 Male, age 18, unknown 60.9
2583 Male, age 75, right hemisphere 60.7
2409 Female, age 72, unknown 46.0
2241 Male, age 72, unknown 45.8
Superior colliculus
nTPM: 75.8
1796 Male, age 53, unknown 89.4
2261 Male, age 18, unknown 84.5
2664 Male, age 75, both hemispheres 83.3
1839 Male, age 51, unknown 76.6
1895 Male, age 76, right hemisphere 76.2
2587 Male, age 74, left hemisphere 75.0
1913 Female, age 42, unknown 71.5
1995 Male, age 72, unknown 70.5
2668 Female, age 75, unknown 69.7
2087 Female, age 72, unknown 60.7
Ventral tegmental area
nTPM: 69.0
2223 Female, age 72, unknown 75.8
1942 Male, age 51, unknown 75.7
1915 Female, age 42, unknown 75.2
2021 Male, age 53, unknown 68.7
2218 Male, age 76, both hemispheres 62.8
2410 Female, age 72, unknown 55.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.7
Samples: 139

Max nTPM: 76.3
Min nTPM: 9.3
Std nTPM: 10.5
Median nTPM: 38.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 76.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 67.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 62.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 62.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 60.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 57.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 57.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 56.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 56.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.2
FF:10158-103A5 76 years, female 84.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 115.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.2
Samples: 4

Max nTPM: 119.3
Min nTPM: 69.6
Sample A Female 119.3
Sample B Female 100.7
Sample C Male 69.6
Sample D Male 71.3
Midbrain
nTPM: 110.7
Samples: 4

Max nTPM: 167.0
Min nTPM: 78.1
Sample A Female 167.0
Sample B Female 93.8
Sample C Male 103.7
Sample D Male 78.1
Periaqueductal gray
nTPM: 96.4
Samples: 3

Max nTPM: 102.4
Min nTPM: 87.9
Sample B Female 98.8
Sample C Male 102.4
Sample D Male 87.9
Superior colliculi
nTPM: 115.9
Samples: 4

Max nTPM: 140.5
Min nTPM: 95.2
Sample A Female 128.1
Sample B Female 140.5
Sample C Male 99.7
Sample D Male 95.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Male 2.5
Sample B Male 1.5
Sample C Female 1.8
Sample D Female 1.5

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