MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.2 nTPM
HPA Brain:167.3 nTPM
GTEx:38.2 nTPM
FANTOM5:193.1 Scaled Tags Per Million
Pig:177.0 nTPM
Mouse:88.4 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 167.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.4
2019 Male, age 18, unknown 208.3
2219 Male, age 76, both hemispheres 159.9
2411 Female, age 72, unknown 153.8
1833 Male, age 53, unknown 153.0
1870 Female, age 42, unknown 142.2
2828 Female, age 72, unknown 138.2
2666 Male, age 74, left hemisphere 137.9
1827 Male, age 72, unknown 137.5
2586 Male, age 75, left hemisphere 136.8
1830 Male, age 51, unknown 136.1
Dorsal raphe nucleus
nTPM: 113.7
2750 Male, age 76, both hemispheres 142.3
2298 Female, age 72, unknown 121.1
2016 Female, age 72, unknown 113.2
1828 Male, age 53, unknown 99.4
2047 Male, age 72, unknown 92.2
Inferior colliculus
nTPM: 121.7
2097 Female, age 72, unknown 149.3
2849 Male, age 72, unknown 119.9
1890 Male, age 53, unknown 115.8
1848 Female, age 42, unknown 101.8
Median raphe nucleus
nTPM: 120.1
2220 Male, age 76, midline 120.1
Periaquaductal grey, anterior
nTPM: 100.9
2502 Female, age 75, unknown 122.5
1795 Male, age 51, unknown 112.9
1947 Male, age 18, unknown 67.1
Periaquaductal grey, dorsal
nTPM: 121.5
1831 Male, age 72, unknown 128.1
1840 Male, age 53, unknown 122.0
2464 Female, age 72, unknown 121.4
2850 Male, age 76, both hemispheres 114.5
Periaquaductal grey, lateral
nTPM: 119.4
2053 Male, age 18, unknown 130.6
2272 Male, age 74, both hemispheres 127.5
2140 Male, age 76, both hemispheres 100.0
Pretectal area
nTPM: 167.3
1944 Female, age 72, unknown 233.2
2007 Male, age 72, unknown 219.4
1816 Male, age 51, unknown 215.4
1817 Female, age 42, unknown 213.7
1815 Male, age 53, unknown 210.1
2407 Male, age 75, both hemispheres 147.2
2667 Female, age 75, unknown 134.4
2224 Female, age 72, unknown 129.3
2316 Male, age 76, right hemisphere 120.2
2825 Male, age 18, unknown 112.0
2273 Male, age 74, both hemispheres 105.5
Red nucleus
nTPM: 148.5
2785 Male, age 18, unknown 230.8
1904 Male, age 53, unknown 158.2
2823 Male, age 76, right hemisphere 154.8
1865 Male, age 51, unknown 152.9
2584 Male, age 75, left hemisphere 149.7
2588 Male, age 74, left hemisphere 144.3
2503 Female, age 72, unknown 140.7
1821 Female, age 72, unknown 136.6
2725 Female, age 75, unknown 134.3
1954 Female, age 42, unknown 133.8
2769 Male, age 72, unknown 123.5
2227 Male, age 72, unknown 122.6
Substantia nigra
nTPM: 137.4
1889 Female, age 72, unknown 188.1
2409 Female, age 72, unknown 156.0
2583 Male, age 75, right hemisphere 152.4
2241 Male, age 72, unknown 143.5
2665 Male, age 74, both hemispheres 139.8
1851 Male, age 51, unknown 129.2
1941 Male, age 53, unknown 122.3
2590 Female, age 75, unknown 120.0
2699 Male, age 18, unknown 114.0
1916 Female, age 42, unknown 109.2
Superior colliculus
nTPM: 163.7
1995 Male, age 72, unknown 198.6
1913 Female, age 42, unknown 194.6
2668 Female, age 75, unknown 189.3
2087 Female, age 72, unknown 188.2
2261 Male, age 18, unknown 164.4
2587 Male, age 74, left hemisphere 158.9
1796 Male, age 53, unknown 154.2
1895 Male, age 76, right hemisphere 142.9
2664 Male, age 75, both hemispheres 132.5
1839 Male, age 51, unknown 113.6
Ventral tegmental area
nTPM: 126.6
2223 Female, age 72, unknown 148.8
2410 Female, age 72, unknown 137.8
1942 Male, age 51, unknown 126.9
2021 Male, age 53, unknown 117.8
2218 Male, age 76, both hemispheres 114.9
1915 Female, age 42, unknown 113.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.2
Samples: 139

Max nTPM: 97.2
Min nTPM: 9.3
Std nTPM: 16.5
Median nTPM: 35.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 97.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 88.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 87.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 82.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 77.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 76.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 68.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 66.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 65.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 193.1
FF:10158-103A5 76 years, female 193.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 177.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 119.0
Samples: 4

Max nTPM: 168.6
Min nTPM: 75.0
Sample A Female 125.5
Sample B Female 75.0
Sample C Male 106.8
Sample D Male 168.6
Midbrain
nTPM: 177.0
Samples: 4

Max nTPM: 284.1
Min nTPM: 125.0
Sample A Female 165.7
Sample B Female 125.0
Sample C Male 284.1
Sample D Male 133.0
Periaqueductal gray
nTPM: 95.7
Samples: 3

Max nTPM: 102.8
Min nTPM: 90.0
Sample B Female 102.8
Sample C Male 90.0
Sample D Male 94.4
Superior colliculi
nTPM: 154.8
Samples: 4

Max nTPM: 235.5
Min nTPM: 81.2
Sample A Female 144.2
Sample B Female 81.2
Sample C Male 235.5
Sample D Male 158.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.4
Samples: 4

Max nTPM: 92.0
Min nTPM: 85.3
Sample A Male 86.5
Sample B Male 85.3
Sample C Female 89.9
Sample D Female 92.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
73513603 Antisense, RP_051121_02_D05, Mouse strain C57BL/6J (56 days, male) 9.9
70595787 Antisense, RP_050628_03_B05, Mouse strain C57BL/6J (56 days, male) 4.1
71924481 Antisense, RP_050628_03_B05, Mouse strain C57BL/6J (56 days, male) 1.9

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