MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.0 nTPM
HPA Brain:67.6 nTPM
GTEx:33.0 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:10.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.3
2586 Male, age 75, left hemisphere 76.4
2828 Female, age 72, unknown 72.6
1833 Male, age 53, unknown 67.3
1830 Male, age 51, unknown 64.5
2666 Male, age 74, left hemisphere 63.2
1870 Female, age 42, unknown 60.0
1827 Male, age 72, unknown 56.2
2411 Female, age 72, unknown 49.0
2019 Male, age 18, unknown 44.5
2219 Male, age 76, both hemispheres 39.8
Dorsal raphe nucleus
nTPM: 49.3
2750 Male, age 76, both hemispheres 58.9
1828 Male, age 53, unknown 55.5
2016 Female, age 72, unknown 53.1
2047 Male, age 72, unknown 42.5
2298 Female, age 72, unknown 36.5
Inferior colliculus
nTPM: 57.1
2849 Male, age 72, unknown 72.2
1848 Female, age 42, unknown 61.4
1890 Male, age 53, unknown 50.0
2097 Female, age 72, unknown 44.7
Median raphe nucleus
nTPM: 65.8
2220 Male, age 76, midline 65.8
Periaquaductal grey, anterior
nTPM: 52.0
1795 Male, age 51, unknown 55.2
1947 Male, age 18, unknown 53.7
2502 Female, age 75, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 58.4
2850 Male, age 76, both hemispheres 99.1
1831 Male, age 72, unknown 49.3
2464 Female, age 72, unknown 46.3
1840 Male, age 53, unknown 38.7
Periaquaductal grey, lateral
nTPM: 62.6
2140 Male, age 76, both hemispheres 72.0
2272 Male, age 74, both hemispheres 62.3
2053 Male, age 18, unknown 53.6
Pretectal area
nTPM: 50.3
2825 Male, age 18, unknown 70.2
2667 Female, age 75, unknown 58.7
2316 Male, age 76, right hemisphere 54.2
2273 Male, age 74, both hemispheres 52.2
2007 Male, age 72, unknown 51.0
2407 Male, age 75, both hemispheres 50.3
1816 Male, age 51, unknown 49.7
1815 Male, age 53, unknown 47.2
1817 Female, age 42, unknown 44.3
1944 Female, age 72, unknown 38.9
2224 Female, age 72, unknown 36.7
Red nucleus
nTPM: 67.6
2769 Male, age 72, unknown 82.7
2823 Male, age 76, right hemisphere 82.6
2584 Male, age 75, left hemisphere 80.7
1954 Female, age 42, unknown 76.7
1865 Male, age 51, unknown 67.8
2227 Male, age 72, unknown 66.8
1904 Male, age 53, unknown 63.4
2725 Female, age 75, unknown 62.2
2588 Male, age 74, left hemisphere 59.7
1821 Female, age 72, unknown 57.9
2503 Female, age 72, unknown 55.4
2785 Male, age 18, unknown 54.6
Substantia nigra
nTPM: 59.1
2699 Male, age 18, unknown 91.0
2665 Male, age 74, both hemispheres 73.8
1916 Female, age 42, unknown 64.2
2583 Male, age 75, right hemisphere 64.0
1941 Male, age 53, unknown 58.7
1851 Male, age 51, unknown 52.5
2409 Female, age 72, unknown 51.6
2590 Female, age 75, unknown 50.6
1889 Female, age 72, unknown 48.6
2241 Male, age 72, unknown 35.9
Superior colliculus
nTPM: 54.9
1995 Male, age 72, unknown 68.6
1796 Male, age 53, unknown 66.8
2668 Female, age 75, unknown 61.3
1913 Female, age 42, unknown 60.2
2664 Male, age 75, both hemispheres 59.8
2587 Male, age 74, left hemisphere 52.6
1839 Male, age 51, unknown 50.0
1895 Male, age 76, right hemisphere 43.6
2261 Male, age 18, unknown 43.2
2087 Female, age 72, unknown 42.8
Ventral tegmental area
nTPM: 58.5
2223 Female, age 72, unknown 63.7
2410 Female, age 72, unknown 63.4
2021 Male, age 53, unknown 60.9
2218 Male, age 76, both hemispheres 59.1
1942 Male, age 51, unknown 57.5
1915 Female, age 42, unknown 46.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.0
Samples: 139

Max nTPM: 92.1
Min nTPM: 12.1
Std nTPM: 13.0
Median nTPM: 30.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 92.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 64.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 64.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 61.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 61.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 56.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 55.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 54.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.7
FF:10158-103A5 76 years, female 103.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 38.8
Min nTPM: 30.5
Sample A Female 38.8
Sample B Female 30.5
Sample C Male 34.9
Sample D Male 37.5
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 47.8
Min nTPM: 23.8
Sample A Female 47.8
Sample B Female 30.0
Sample C Male 23.8
Sample D Male 26.1
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 30.9
Min nTPM: 29.1
Sample B Female 29.6
Sample C Male 30.9
Sample D Male 29.1
Superior colliculi
nTPM: 31.2
Samples: 4

Max nTPM: 39.8
Min nTPM: 24.8
Sample A Female 39.8
Sample B Female 24.8
Sample C Male 26.3
Sample D Male 33.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.7
Sample A Male 13.3
Sample B Male 9.7
Sample C Female 10.4
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69352908 Antisense, RP_050412_01_D04, Mouse strain C57BL/6J (56 days, male) 0.8

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