MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.9 nTPM
HPA Brain:57.2 nTPM
GTEx:79.9 nTPM
FANTOM5:59.2 Scaled Tags Per Million
Pig:50.1 nTPM
Mouse:28.3 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.6
2666 Male, age 74, left hemisphere 72.8
2586 Male, age 75, left hemisphere 67.1
2828 Female, age 72, unknown 59.3
1827 Male, age 72, unknown 53.4
1870 Female, age 42, unknown 51.8
2019 Male, age 18, unknown 50.5
2411 Female, age 72, unknown 47.8
1830 Male, age 51, unknown 44.7
1833 Male, age 53, unknown 44.7
2219 Male, age 76, both hemispheres 44.3
Dorsal raphe nucleus
nTPM: 49.4
2298 Female, age 72, unknown 54.6
2047 Male, age 72, unknown 51.4
2750 Male, age 76, both hemispheres 49.4
1828 Male, age 53, unknown 47.3
2016 Female, age 72, unknown 44.3
Inferior colliculus
nTPM: 44.7
2097 Female, age 72, unknown 47.3
2849 Male, age 72, unknown 45.6
1848 Female, age 42, unknown 43.6
1890 Male, age 53, unknown 42.2
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Periaquaductal grey, anterior
nTPM: 57.2
1947 Male, age 18, unknown 61.9
1795 Male, age 51, unknown 56.8
2502 Female, age 75, unknown 52.9
Periaquaductal grey, dorsal
nTPM: 40.4
1840 Male, age 53, unknown 44.2
1831 Male, age 72, unknown 41.0
2464 Female, age 72, unknown 39.2
2850 Male, age 76, both hemispheres 37.3
Periaquaductal grey, lateral
nTPM: 40.7
2053 Male, age 18, unknown 44.9
2272 Male, age 74, both hemispheres 41.5
2140 Male, age 76, both hemispheres 35.5
Pretectal area
nTPM: 49.4
2007 Male, age 72, unknown 60.3
1816 Male, age 51, unknown 60.2
1817 Female, age 42, unknown 54.3
1944 Female, age 72, unknown 52.7
1815 Male, age 53, unknown 52.4
2407 Male, age 75, both hemispheres 51.1
2667 Female, age 75, unknown 46.3
2825 Male, age 18, unknown 45.9
2316 Male, age 76, right hemisphere 43.7
2224 Female, age 72, unknown 39.7
2273 Male, age 74, both hemispheres 36.8
Red nucleus
nTPM: 50.2
2584 Male, age 75, left hemisphere 60.3
1821 Female, age 72, unknown 52.1
1904 Male, age 53, unknown 51.9
2769 Male, age 72, unknown 51.9
2785 Male, age 18, unknown 51.9
1865 Male, age 51, unknown 50.1
2503 Female, age 72, unknown 49.4
2588 Male, age 74, left hemisphere 48.3
2227 Male, age 72, unknown 47.9
1954 Female, age 42, unknown 47.3
2823 Male, age 76, right hemisphere 47.0
2725 Female, age 75, unknown 44.5
Substantia nigra
nTPM: 54.8
1916 Female, age 42, unknown 69.4
1851 Male, age 51, unknown 61.4
2583 Male, age 75, right hemisphere 59.3
2665 Male, age 74, both hemispheres 58.2
1941 Male, age 53, unknown 56.1
1889 Female, age 72, unknown 54.5
2590 Female, age 75, unknown 49.3
2699 Male, age 18, unknown 47.9
2409 Female, age 72, unknown 45.9
2241 Male, age 72, unknown 45.7
Superior colliculus
nTPM: 51.8
2668 Female, age 75, unknown 72.0
2664 Male, age 75, both hemispheres 62.9
1796 Male, age 53, unknown 56.5
1913 Female, age 42, unknown 52.9
2261 Male, age 18, unknown 51.5
2087 Female, age 72, unknown 51.1
1995 Male, age 72, unknown 45.2
1839 Male, age 51, unknown 44.8
1895 Male, age 76, right hemisphere 41.3
2587 Male, age 74, left hemisphere 39.5
Ventral tegmental area
nTPM: 49.2
1915 Female, age 42, unknown 55.3
2410 Female, age 72, unknown 51.8
2223 Female, age 72, unknown 49.3
1942 Male, age 51, unknown 47.7
2021 Male, age 53, unknown 46.0
2218 Male, age 76, both hemispheres 45.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.9
Samples: 139

Max nTPM: 135.9
Min nTPM: 40.2
Std nTPM: 16.4
Median nTPM: 77.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 135.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 128.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 125.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 124.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 123.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 116.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 113.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 109.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 108.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 108.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 100.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.2
FF:10158-103A5 76 years, female 59.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.0
Samples: 4

Max nTPM: 54.6
Min nTPM: 37.3
Sample A Female 54.6
Sample B Female 37.3
Sample C Male 46.7
Sample D Male 41.5
Midbrain
nTPM: 49.0
Samples: 4

Max nTPM: 57.2
Min nTPM: 41.8
Sample A Female 57.2
Sample B Female 41.8
Sample C Male 52.0
Sample D Male 44.9
Periaqueductal gray
nTPM: 39.1
Samples: 3

Max nTPM: 43.7
Min nTPM: 34.9
Sample B Female 38.8
Sample C Male 43.7
Sample D Male 34.9
Superior colliculi
nTPM: 50.1
Samples: 4

Max nTPM: 58.3
Min nTPM: 42.1
Sample A Female 58.3
Sample B Female 42.1
Sample C Male 51.5
Sample D Male 48.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 30.1
Min nTPM: 27.3
Sample A Male 30.1
Sample B Male 27.4
Sample C Female 28.2
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69080030 Antisense, RP_050324_01_E08, Mouse strain C57BL/6J (56 days, male) 2.6

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