HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:87.1 nTPM
HPA Brain:54.9 nTPM
GTEx:87.1 nTPM
FANTOM5:49.0 Scaled Tags Per Million
Pig:43.6 nTPM
Mouse:34.0 nTPM
Allen mouse:3.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004872Antibody HPA007728
Glial cells Not detectedNot detected
Neuronal cells LowLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Hippocampus
nTPM: 49.6
1898 Male, age 80, left hemisphere 56.6
1855 Male, age 76, left hemisphere 55.1
2621 Female, age 67, right hemisphere 50.7
2529 Female, age 94, left hemisphere 50.4
1911 Female, age 85, right hemisphere 42.7
2148 Female, age 91, left hemisphere 42.4
Dentate gyrus
nTPM: 47.6
2531 Female, age 67, both hemispheres 54.8
2010 Male, age 76, both hemispheres 51.7
2530 Female, age 94, left hemisphere 50.5
1927 Female, age 91, both hemispheres 48.5
2528 Male, age 74, both hemispheres 42.2
2246 Female, age 85, both hemispheres 37.9
Entorhinal gyrus
nTPM: 54.9
2764 Male, age 80, right hemisphere 60.6
2613 Female, age 94, left hemisphere 56.5
2117 Female, age 91, right hemisphere 55.1
1938 Female, age 85, left hemisphere 53.7
1787 Male, age 76, left hemisphere 53.6
2686 Male, age 75, right hemisphere 49.8
Hippocampus, CA1
nTPM: 49.5
2749 Male, age 80, left hemisphere 60.8
2045 Male, age 76, both hemispheres 52.5
1873 Female, age 85, both hemispheres 46.5
2527 Male, age 74, both hemispheres 45.5
2082 Female, age 91, right hemisphere 42.1
Hippocampus, CA2
nTPM: 47.3
1963 Male, age 80, left hemisphere 52.5
1892 Male, age 76, both hemispheres 50.4
2437 Female, age 94, left hemisphere 50.2
2113 Female, age 91, right hemisphere 47.5
1940 Female, age 85, left hemisphere 42.0
2249 Male, age 74, both hemispheres 41.2
Hippocampus, CA3
nTPM: 50.9
2861 Female, age 67, both hemispheres 59.7
2620 Female, age 94, left hemisphere 57.0
2137 Male, age 80, left hemisphere 56.5
1867 Male, age 76, both hemispheres 49.5
2436 Male, age 74, both hemispheres 41.4
1891 Female, age 85, both hemispheres 41.3
Parahippocampal cortex
nTPM: 49.8
2622 Female, age 67, right hemisphere 53.2
1850 Male, age 80, both hemispheres 52.9
2245 Female, age 91, both hemispheres 52.4
2532 Female, age 72, left hemisphere 51.4
2693 Female, age 94, both hemispheres 50.1
1933 Female, age 85, both hemispheres 49.8
2692 Male, age 74, both hemispheres 49.6
1990 Female, age 91, right hemisphere 47.8
2018 Male, age 76, both hemispheres 47.5
2250 Female, age 67, right hemisphere 43.2
Perirhinal gyrus
nTPM: 52.3
1847 Female, age 91, left hemisphere 59.4
2521 Female, age 94, right hemisphere 56.1
1794 Male, age 80, right hemisphere 55.2
1841 Female, age 85, right hemisphere 47.1
2848 Male, age 76, right hemisphere 43.7
Subiculum
nTPM: 45.1
1901 Male, age 80, both hemispheres 50.6
2619 Male, age 74, both hemispheres 50.4
1977 Female, age 85, both hemispheres 48.8
2042 Male, age 76, both hemispheres 47.4
2729 Female, age 91, right hemisphere 42.3
2438 Female, age 94, left hemisphere 31.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 87.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 87.1
Samples: 197

Max nTPM: 154.2
Min nTPM: 45.9
Std nTPM: 19.8
Median nTPM: 85.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 154.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 136.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 134.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 133.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 131.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 130.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 130.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 128.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 127.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 126.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 125.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.0
FF:10169-103B7 60 years, female 51.9
FF:10153-102I9 76 years, female 46.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 43.6
Pig sample Sample description nTPM
Subiculum
nTPM: 38.3
Samples: 4

Max nTPM: 52.8
Min nTPM: 29.7
Sample A Female 52.8
Sample B Female 33.0
Sample C Male 37.8
Sample D Male 29.7
Dorsal hippocampus
nTPM: 43.6
Samples: 4

Max nTPM: 58.8
Min nTPM: 31.3
Sample A Female 58.8
Sample B Female 42.3
Sample C Male 42.0
Sample D Male 31.3
Entorhinal cortex
nTPM: 38.6
Samples: 4

Max nTPM: 43.2
Min nTPM: 34.9
Sample A Female 43.2
Sample B Female 36.8
Sample C Male 39.3
Sample D Male 34.9
Ventral hippocampus
nTPM: 42.3
Samples: 4

Max nTPM: 53.4
Min nTPM: 28.9
Sample A Female 45.1
Sample B Female 28.9
Sample C Male 53.4
Sample D Male 41.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.0
Samples: 4

Max nTPM: 36.0
Min nTPM: 31.3
Sample A Male 32.6
Sample B Male 36.0
Sample C Female 31.3
Sample D Female 36.0
Hippocampal formation
nTPM: 31.9
Samples: 4

Max nTPM: 35.3
Min nTPM: 27.4
Sample A Male 27.4
Sample B Male 30.7
Sample C Female 35.3
Sample D Female 34.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.4
69080030 Antisense, RP_050324_01_E08, Mouse strain C57BL/6J (56 days, male) 3.4

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