BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.2 nTPM
HPA Brain:170.8 nTPM
GTEx:66.2 nTPM
FANTOM5:179.6 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:0.0 nTPM
Allen mouse:2.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 170.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 142.5
2481 Female, age 94, left hemisphere 183.6
1854 Male, age 80, left hemisphere 152.7
1857 Female, age 85, left hemisphere 151.8
2289 Male, age 61, right hemisphere 150.9
2290 Female, age 72, unknown 147.5
2288 Male, age 75, left hemisphere 146.4
2846 Female, age 79, unknown 106.2
1781 Male, age 74, unknown 100.7
Globus pallidus, externus
nTPM: 170.8
1996 Male, age 80, right hemisphere 227.2
2646 Male, age 61, right hemisphere 222.3
2772 Female, age 79, unknown 153.7
2567 Female, age 72, unknown 127.7
2395 Male, age 75, both hemispheres 123.2
Globus pallidus, internus
nTPM: 157.6
1818 Male, age 74, unknown 196.3
2037 Male, age 80, right hemisphere 195.6
2483 Female, age 94, right hemisphere 182.4
2778 Female, age 91, both hemispheres 151.4
2111 Female, age 85, right hemisphere 133.4
2287 Male, age 75, right hemisphere 129.9
2566 Female, age 72, unknown 114.1
Nucleus accumbens
nTPM: 125.5
2286 Male, age 75, left hemisphere 165.1
1806 Female, age 85, left hemisphere 137.2
2391 Female, age 94, left hemisphere 126.9
2824 Male, age 61, right hemisphere 125.0
2698 Female, age 72, unknown 120.3
2732 Male, age 80, right hemisphere 116.4
1856 Female, age 91, right hemisphere 110.2
1783 Male, age 74, unknown 103.1
Nucleus basalis of Meynert
nTPM: 134.7
2569 Male, age 61, both hemispheres 239.7
2393 Male, age 80, right hemisphere 104.4
2484 Female, age 94, left hemisphere 99.8
2821 Male, age 75, both hemispheres 94.8
Nucleus of the diagonal band
nTPM: 96.1
1979 Male, age 74, unknown 109.6
1812 Female, age 91, both hemispheres 108.8
2195 Female, age 85, both hemispheres 92.0
2775 Male, age 80, right hemisphere 86.0
2029 Male, age 61, right hemisphere 84.1
Putamen
nTPM: 108.6
2482 Female, age 94, left hemisphere 148.8
1937 Female, age 91, right hemisphere 111.3
1838 Male, age 80, right hemisphere 106.2
1829 Male, age 74, unknown 102.9
2489 Female, age 72, unknown 100.5
2647 Male, age 75, left hemisphere 99.2
2466 Female, age 79, unknown 91.5
Septal nuclei
nTPM: 109.3
2199 Male, age 80, right hemisphere 147.0
2059 Female, age 85, both hemispheres 134.2
2394 Male, age 61, left hemisphere 116.1
2009 Female, age 91, both hemispheres 98.4
2629 Female, age 94, right hemisphere 93.3
2031 Female, age 72, unknown 88.8
1960 Male, age 74, unknown 87.2
Stria terminalis, bed nucleus
nTPM: 90.2
2201 Male, age 74, unknown 109.0
2486 Female, age 94, both hemispheres 84.8
1974 Female, age 91, both hemispheres 76.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 66.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.2
Samples: 246

Max nTPM: 188.5
Min nTPM: 13.5
Std nTPM: 26.0
Median nTPM: 65.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 188.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 150.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 144.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 137.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 133.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 129.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 123.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 116.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 115.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 112.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.3
Samples: 246

Max nTPM: 132.1
Min nTPM: 12.6
Std nTPM: 19.8
Median nTPM: 48.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 132.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 109.3
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 105.7
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 98.6
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 98.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 96.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 95.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 92.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 91.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 90.9
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 90.4
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Brain - Putamen (basal ganglia)
Average nTPM: 52.1
Samples: 205

Max nTPM: 103.4
Min nTPM: 8.9
Std nTPM: 20.5
Median nTPM: 50.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 103.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 102.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 102.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 98.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 97.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 95.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 95.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 93.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 91.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 90.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 86.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 179.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 179.6
FF:10164-103B2 76 years, female 179.6
Nucleus accumbens
Scaled Tags Per Million: 101.7
FF:10037-101F1 23-56 years, mixed 101.7
Putamen
Scaled Tags Per Million: 138.7
FF:10176-103C5 60 years, female 138.7
Globus pallidus
Scaled Tags Per Million: 149.4
FF:10161-103A8 76 years, female 165.4
FF:10175-103C4 60 years, female 133.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.7
Pig sample Sample description nTPM
Caudate
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Female 0.6
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.1
Putamen
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Female 0.8
Sample B Female 0.6
Sample C Male 0.5
Sample D Male 0.3
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.4
Sample A Female 0.8
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.4
Ventral pallidum
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.7
Sample C Male 0.8
Sample D Male 0.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.6
Samples: 4

Max nTPM: 24.9
Min nTPM: 22.3
Sample A Male 24.9
Sample B Male 24.6
Sample C Female 22.4
Sample D Female 22.3
Septum
nTPM: 31.2
Samples: 4

Max nTPM: 36.5
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 28.9
Sample C Female 36.5
Sample D Female 31.7
Ventral forebrain
nTPM: 21.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 18.9
Sample A Male 23.4
Sample B Male 21.1
Sample C Female 21.2
Sample D Female 18.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 1.8
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
Striatum
Expression energy: 1.8
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 1.8
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
Striatum
Expression energy: 1.8
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 1.8
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 2.2
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 2.2
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 2.2
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.2
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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