MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.6 nTPM
HPA Brain:190.9 nTPM
GTEx:40.6 nTPM
FANTOM5:237.8 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:0.0 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 190.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.2
2828 Female, age 72, unknown 180.0
2586 Male, age 75, left hemisphere 178.7
1833 Male, age 53, unknown 154.7
1870 Female, age 42, unknown 153.4
1827 Male, age 72, unknown 136.8
2411 Female, age 72, unknown 134.0
2219 Male, age 76, both hemispheres 127.5
1830 Male, age 51, unknown 125.1
2019 Male, age 18, unknown 118.1
2666 Male, age 74, left hemisphere 103.4
Dorsal raphe nucleus
nTPM: 178.8
2016 Female, age 72, unknown 204.1
2298 Female, age 72, unknown 189.5
2047 Male, age 72, unknown 185.9
1828 Male, age 53, unknown 180.2
2750 Male, age 76, both hemispheres 134.1
Inferior colliculus
nTPM: 187.0
1890 Male, age 53, unknown 194.7
2849 Male, age 72, unknown 190.5
1848 Female, age 42, unknown 184.2
2097 Female, age 72, unknown 178.6
Median raphe nucleus
nTPM: 118.8
2220 Male, age 76, midline 118.8
Periaquaductal grey, anterior
nTPM: 153.3
2502 Female, age 75, unknown 175.2
1795 Male, age 51, unknown 152.2
1947 Male, age 18, unknown 132.6
Periaquaductal grey, dorsal
nTPM: 188.2
2850 Male, age 76, both hemispheres 228.4
1840 Male, age 53, unknown 210.9
2464 Female, age 72, unknown 172.0
1831 Male, age 72, unknown 141.6
Periaquaductal grey, lateral
nTPM: 190.9
2140 Male, age 76, both hemispheres 214.0
2053 Male, age 18, unknown 199.6
2272 Male, age 74, both hemispheres 159.0
Pretectal area
nTPM: 147.3
2667 Female, age 75, unknown 168.8
2825 Male, age 18, unknown 162.5
2273 Male, age 74, both hemispheres 161.3
1817 Female, age 42, unknown 156.5
2224 Female, age 72, unknown 153.2
1944 Female, age 72, unknown 148.7
1816 Male, age 51, unknown 144.1
1815 Male, age 53, unknown 140.9
2316 Male, age 76, right hemisphere 140.6
2407 Male, age 75, both hemispheres 125.8
2007 Male, age 72, unknown 118.4
Red nucleus
nTPM: 167.7
1821 Female, age 72, unknown 211.9
1954 Female, age 42, unknown 204.9
2769 Male, age 72, unknown 197.4
2227 Male, age 72, unknown 187.4
2503 Female, age 72, unknown 180.2
2823 Male, age 76, right hemisphere 176.1
1904 Male, age 53, unknown 168.5
1865 Male, age 51, unknown 166.1
2725 Female, age 75, unknown 146.3
2588 Male, age 74, left hemisphere 140.7
2785 Male, age 18, unknown 133.4
2584 Male, age 75, left hemisphere 99.2
Substantia nigra
nTPM: 158.1
2699 Male, age 18, unknown 227.6
1916 Female, age 42, unknown 188.1
1851 Male, age 51, unknown 170.8
2409 Female, age 72, unknown 159.9
2241 Male, age 72, unknown 156.6
1889 Female, age 72, unknown 150.9
2665 Male, age 74, both hemispheres 143.5
2590 Female, age 75, unknown 135.4
2583 Male, age 75, right hemisphere 130.8
1941 Male, age 53, unknown 117.1
Superior colliculus
nTPM: 145.6
2664 Male, age 75, both hemispheres 178.3
1995 Male, age 72, unknown 161.7
2087 Female, age 72, unknown 149.0
1895 Male, age 76, right hemisphere 145.2
2668 Female, age 75, unknown 141.2
2261 Male, age 18, unknown 141.1
1913 Female, age 42, unknown 138.4
1796 Male, age 53, unknown 137.7
1839 Male, age 51, unknown 136.6
2587 Male, age 74, left hemisphere 126.4
Ventral tegmental area
nTPM: 140.6
1942 Male, age 51, unknown 151.4
1915 Female, age 42, unknown 151.0
2021 Male, age 53, unknown 147.6
2410 Female, age 72, unknown 141.6
2218 Male, age 76, both hemispheres 139.3
2223 Female, age 72, unknown 112.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.6
Samples: 139

Max nTPM: 149.8
Min nTPM: 6.2
Std nTPM: 21.3
Median nTPM: 37.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 149.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 140.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 98.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 86.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 85.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 78.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 77.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 74.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 70.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 70.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 237.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 237.8
FF:10158-103A5 76 years, female 237.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.1
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.7
Sample A Female 1.8
Sample B Female 0.7
Sample C Male 1.1
Sample D Male 0.7
Midbrain
nTPM: 1.0
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.4
Sample A Female 2.4
Sample B Female 0.6
Sample C Male 0.6
Sample D Male 0.4
Periaqueductal gray
nTPM: 1.0
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.9
Sample B Female 1.0
Sample C Male 1.0
Sample D Male 0.9
Superior colliculi
nTPM: 1.4
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.5
Sample A Female 2.1
Sample B Female 2.0
Sample C Male 1.1
Sample D Male 0.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.9
Samples: 4

Max nTPM: 39.2
Min nTPM: 34.5
Sample A Male 37.6
Sample B Male 34.5
Sample C Female 36.2
Sample D Female 39.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.4
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
Midbrain
Expression energy: 2.4
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.4
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1
Midbrain
Expression energy: 2.4
68798019 Antisense, RP_050215_01_F03, Mouse strain C57BL/6J (56 days, male) 2.4
70919931 Antisense, RP_050713_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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