MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:321.7 nTPM
HPA Brain:572.7 nTPM
GTEx:321.7 nTPM
FANTOM5:517.8 Scaled Tags Per Million
Pig:575.9 nTPM
Mouse:781.9 nTPM
Allen mouse:21.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 572.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 405.3
2666 Male, age 74, left hemisphere 507.4
1827 Male, age 72, unknown 471.7
2219 Male, age 76, both hemispheres 440.3
2586 Male, age 75, left hemisphere 421.9
2828 Female, age 72, unknown 407.2
1870 Female, age 42, unknown 395.4
2411 Female, age 72, unknown 386.3
1833 Male, age 53, unknown 354.5
2019 Male, age 18, unknown 347.3
1830 Male, age 51, unknown 320.6
Dorsal raphe nucleus
nTPM: 408.8
2298 Female, age 72, unknown 505.6
2047 Male, age 72, unknown 429.2
2750 Male, age 76, both hemispheres 420.6
1828 Male, age 53, unknown 411.9
2016 Female, age 72, unknown 276.9
Inferior colliculus
nTPM: 400.6
2097 Female, age 72, unknown 454.7
2849 Male, age 72, unknown 409.7
1848 Female, age 42, unknown 377.9
1890 Male, age 53, unknown 360.1
Median raphe nucleus
nTPM: 572.7
2220 Male, age 76, midline 572.7
Periaquaductal grey, anterior
nTPM: 476.6
1795 Male, age 51, unknown 548.6
1947 Male, age 18, unknown 497.9
2502 Female, age 75, unknown 383.5
Periaquaductal grey, dorsal
nTPM: 378.3
2850 Male, age 76, both hemispheres 417.6
1831 Male, age 72, unknown 406.6
1840 Male, age 53, unknown 358.5
2464 Female, age 72, unknown 330.6
Periaquaductal grey, lateral
nTPM: 357.6
2272 Male, age 74, both hemispheres 390.5
2053 Male, age 18, unknown 353.5
2140 Male, age 76, both hemispheres 328.9
Pretectal area
nTPM: 473.5
1816 Male, age 51, unknown 630.0
1817 Female, age 42, unknown 611.8
2007 Male, age 72, unknown 580.4
1944 Female, age 72, unknown 572.1
1815 Male, age 53, unknown 518.3
2667 Female, age 75, unknown 492.2
2224 Female, age 72, unknown 466.8
2825 Male, age 18, unknown 410.3
2273 Male, age 74, both hemispheres 336.9
2407 Male, age 75, both hemispheres 298.7
2316 Male, age 76, right hemisphere 291.2
Red nucleus
nTPM: 363.4
2584 Male, age 75, left hemisphere 423.5
2725 Female, age 75, unknown 413.9
2785 Male, age 18, unknown 412.8
1821 Female, age 72, unknown 397.5
2503 Female, age 72, unknown 356.6
1954 Female, age 42, unknown 352.9
2769 Male, age 72, unknown 345.5
2227 Male, age 72, unknown 343.4
2823 Male, age 76, right hemisphere 340.7
1904 Male, age 53, unknown 336.4
1865 Male, age 51, unknown 325.8
2588 Male, age 74, left hemisphere 311.6
Substantia nigra
nTPM: 454.2
1916 Female, age 42, unknown 622.6
1941 Male, age 53, unknown 544.1
1889 Female, age 72, unknown 529.7
1851 Male, age 51, unknown 483.9
2665 Male, age 74, both hemispheres 483.1
2583 Male, age 75, right hemisphere 424.0
2699 Male, age 18, unknown 410.1
2241 Male, age 72, unknown 356.2
2409 Female, age 72, unknown 348.5
2590 Female, age 75, unknown 340.1
Superior colliculus
nTPM: 414.7
2668 Female, age 75, unknown 532.8
1796 Male, age 53, unknown 523.6
2087 Female, age 72, unknown 481.6
2261 Male, age 18, unknown 477.7
2587 Male, age 74, left hemisphere 399.6
1913 Female, age 42, unknown 369.0
1839 Male, age 51, unknown 368.6
1895 Male, age 76, right hemisphere 357.9
2664 Male, age 75, both hemispheres 318.5
1995 Male, age 72, unknown 317.9
Ventral tegmental area
nTPM: 459.3
2218 Male, age 76, both hemispheres 579.5
1915 Female, age 42, unknown 509.3
2410 Female, age 72, unknown 473.1
2223 Female, age 72, unknown 441.7
1942 Male, age 51, unknown 400.1
2021 Male, age 53, unknown 352.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 321.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 321.7
Samples: 139

Max nTPM: 767.1
Min nTPM: 113.9
Std nTPM: 138.9
Median nTPM: 280.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 767.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 745.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 733.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 731.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 700.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 653.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 605.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 605.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 592.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 579.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 549.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 517.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 517.8
FF:10158-103A5 76 years, female 517.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 575.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 508.6
Samples: 4

Max nTPM: 684.2
Min nTPM: 309.1
Sample A Female 667.8
Sample B Female 373.2
Sample C Male 684.2
Sample D Male 309.1
Midbrain
nTPM: 544.9
Samples: 4

Max nTPM: 769.3
Min nTPM: 425.4
Sample A Female 441.4
Sample B Female 425.4
Sample C Male 769.3
Sample D Male 543.3
Periaqueductal gray
nTPM: 425.7
Samples: 3

Max nTPM: 543.8
Min nTPM: 361.4
Sample B Female 372.0
Sample C Male 543.8
Sample D Male 361.4
Superior colliculi
nTPM: 575.9
Samples: 4

Max nTPM: 681.8
Min nTPM: 397.3
Sample A Female 667.6
Sample B Female 397.3
Sample C Male 681.8
Sample D Male 557.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 781.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 782.0
Samples: 4

Max nTPM: 853.3
Min nTPM: 730.1
Sample A Male 853.3
Sample B Male 749.6
Sample C Female 730.1
Sample D Female 794.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
74881559 Antisense, RP_060315_04_C11, Mouse strain C57BL/6J (56 days, male) 21.6
69526976 Antisense, RP_050421_02_A08, Mouse strain C57BL/6J (56 days, male) 21.5

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