MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:27.2 nTPM
GTEx:3.8 nTPM
FANTOM5:9.6 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:1.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.6
2586 Male, age 75, left hemisphere 35.2
2828 Female, age 72, unknown 28.7
1833 Male, age 53, unknown 25.5
1870 Female, age 42, unknown 24.7
2411 Female, age 72, unknown 24.7
1830 Male, age 51, unknown 22.8
1827 Male, age 72, unknown 22.1
2666 Male, age 74, left hemisphere 22.0
2019 Male, age 18, unknown 20.6
2219 Male, age 76, both hemispheres 19.8
Dorsal raphe nucleus
nTPM: 26.6
2016 Female, age 72, unknown 33.3
1828 Male, age 53, unknown 27.9
2047 Male, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 22.7
2298 Female, age 72, unknown 22.3
Inferior colliculus
nTPM: 23.3
1848 Female, age 42, unknown 25.9
2849 Male, age 72, unknown 23.8
1890 Male, age 53, unknown 23.5
2097 Female, age 72, unknown 20.2
Median raphe nucleus
nTPM: 18.7
2220 Male, age 76, midline 18.7
Periaquaductal grey, anterior
nTPM: 26.1
2502 Female, age 75, unknown 27.1
1795 Male, age 51, unknown 26.7
1947 Male, age 18, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 26.9
1840 Male, age 53, unknown 31.5
2464 Female, age 72, unknown 27.2
2850 Male, age 76, both hemispheres 25.4
1831 Male, age 72, unknown 23.6
Periaquaductal grey, lateral
nTPM: 27.2
2140 Male, age 76, both hemispheres 29.4
2053 Male, age 18, unknown 28.9
2272 Male, age 74, both hemispheres 23.3
Pretectal area
nTPM: 23.0
2825 Male, age 18, unknown 26.6
2273 Male, age 74, both hemispheres 24.5
2667 Female, age 75, unknown 24.3
2224 Female, age 72, unknown 24.0
1817 Female, age 42, unknown 23.9
2407 Male, age 75, both hemispheres 23.2
1815 Male, age 53, unknown 22.4
1944 Female, age 72, unknown 21.9
1816 Male, age 51, unknown 21.7
2316 Male, age 76, right hemisphere 21.4
2007 Male, age 72, unknown 19.3
Red nucleus
nTPM: 26.2
2823 Male, age 76, right hemisphere 29.6
2769 Male, age 72, unknown 29.4
2227 Male, age 72, unknown 29.3
1904 Male, age 53, unknown 27.7
2503 Female, age 72, unknown 27.6
2588 Male, age 74, left hemisphere 27.3
1821 Female, age 72, unknown 26.7
1865 Male, age 51, unknown 26.5
1954 Female, age 42, unknown 26.4
2725 Female, age 75, unknown 21.5
2785 Male, age 18, unknown 21.3
2584 Male, age 75, left hemisphere 21.2
Substantia nigra
nTPM: 24.8
2699 Male, age 18, unknown 30.5
2409 Female, age 72, unknown 27.8
2590 Female, age 75, unknown 25.9
1851 Male, age 51, unknown 25.4
2583 Male, age 75, right hemisphere 25.0
2665 Male, age 74, both hemispheres 24.9
1916 Female, age 42, unknown 24.8
2241 Male, age 72, unknown 23.0
1889 Female, age 72, unknown 20.9
1941 Male, age 53, unknown 19.4
Superior colliculus
nTPM: 24.7
2664 Male, age 75, both hemispheres 32.6
1995 Male, age 72, unknown 29.1
2668 Female, age 75, unknown 25.6
1913 Female, age 42, unknown 24.6
2261 Male, age 18, unknown 24.5
2087 Female, age 72, unknown 23.6
1839 Male, age 51, unknown 23.1
2587 Male, age 74, left hemisphere 22.6
1895 Male, age 76, right hemisphere 21.2
1796 Male, age 53, unknown 20.6
Ventral tegmental area
nTPM: 22.7
1942 Male, age 51, unknown 25.1
2021 Male, age 53, unknown 24.7
2410 Female, age 72, unknown 24.0
1915 Female, age 42, unknown 22.7
2223 Female, age 72, unknown 20.6
2218 Male, age 76, both hemispheres 19.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.8
Samples: 139

Max nTPM: 11.3
Min nTPM: 0.0
Std nTPM: 2.0
Median nTPM: 3.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 11.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 9.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 8.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 7.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 7.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 7.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 7.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 7.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 6.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 6.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.6
FF:10158-103A5 76 years, female 9.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 13.0
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 10.9
Sample C Male 10.0
Sample D Male 13.0
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 10.1
Sample C Male 9.4
Sample D Male 9.8
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 11.7
Min nTPM: 9.8
Sample B Female 11.7
Sample C Male 9.8
Sample D Male 10.9
Superior colliculi
nTPM: 9.2
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 11.2
Sample C Male 8.7
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.3
Sample A Male 1.5
Sample B Male 1.3
Sample C Female 1.7
Sample D Female 1.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
77454629 Antisense, RP_070129_01_A12, Mouse strain C57BL/6J (56 days, male) 0.2

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