BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:24.5 nTPM
HPA Brain:144.4 nTPM
GTEx:24.5 nTPM
FANTOM5:146.4 Scaled Tags Per Million
Pig:93.8 nTPM
Mouse:55.2 nTPM
Allen mouse:7.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019635Antibody HPA019691Antibody HPA022119
Glial cells Not detectedLowLow
Neuronal cells Not detectedLowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 144.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 70.5
2288 Male, age 75, left hemisphere 87.4
2481 Female, age 94, left hemisphere 79.7
1854 Male, age 80, left hemisphere 71.7
1781 Male, age 74, unknown 71.5
2289 Male, age 61, right hemisphere 69.1
2846 Female, age 79, unknown 67.5
2290 Female, age 72, unknown 65.7
1857 Female, age 85, left hemisphere 51.8
Globus pallidus, externus
nTPM: 142.6
2567 Female, age 72, unknown 179.1
2646 Male, age 61, right hemisphere 172.5
1996 Male, age 80, right hemisphere 141.1
2772 Female, age 79, unknown 114.9
2395 Male, age 75, both hemispheres 105.5
Globus pallidus, internus
nTPM: 144.4
2111 Female, age 85, right hemisphere 179.5
2566 Female, age 72, unknown 173.3
1818 Male, age 74, unknown 146.3
2778 Female, age 91, both hemispheres 136.5
2037 Male, age 80, right hemisphere 132.0
2287 Male, age 75, right hemisphere 128.2
2483 Female, age 94, right hemisphere 115.2
Nucleus accumbens
nTPM: 81.2
2391 Female, age 94, left hemisphere 107.2
2698 Female, age 72, unknown 105.3
2732 Male, age 80, right hemisphere 94.1
2286 Male, age 75, left hemisphere 77.0
1783 Male, age 74, unknown 71.2
1806 Female, age 85, left hemisphere 67.5
2824 Male, age 61, right hemisphere 66.7
1856 Female, age 91, right hemisphere 60.2
Nucleus basalis of Meynert
nTPM: 100.9
2569 Male, age 61, both hemispheres 164.3
2821 Male, age 75, both hemispheres 89.6
2393 Male, age 80, right hemisphere 77.2
2484 Female, age 94, left hemisphere 72.4
Nucleus of the diagonal band
nTPM: 54.0
1812 Female, age 91, both hemispheres 59.0
1979 Male, age 74, unknown 57.2
2029 Male, age 61, right hemisphere 53.5
2195 Female, age 85, both hemispheres 50.3
2775 Male, age 80, right hemisphere 50.0
Putamen
nTPM: 83.2
2647 Male, age 75, left hemisphere 105.3
2489 Female, age 72, unknown 104.2
1829 Male, age 74, unknown 99.3
2482 Female, age 94, left hemisphere 88.9
1937 Female, age 91, right hemisphere 70.7
2466 Female, age 79, unknown 58.6
1838 Male, age 80, right hemisphere 55.3
Septal nuclei
nTPM: 65.2
2394 Male, age 61, left hemisphere 90.8
2199 Male, age 80, right hemisphere 85.9
2629 Female, age 94, right hemisphere 69.0
2059 Female, age 85, both hemispheres 64.9
2009 Female, age 91, both hemispheres 57.9
2031 Female, age 72, unknown 44.8
1960 Male, age 74, unknown 43.5
Stria terminalis, bed nucleus
nTPM: 66.5
2201 Male, age 74, unknown 82.2
1974 Female, age 91, both hemispheres 63.0
2486 Female, age 94, both hemispheres 54.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.0
Samples: 246

Max nTPM: 37.9
Min nTPM: 4.3
Std nTPM: 6.5
Median nTPM: 20.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 37.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 37.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 35.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 34.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 34.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 34.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 33.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 33.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 33.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 33.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 32.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.0
Samples: 246

Max nTPM: 54.7
Min nTPM: 4.1
Std nTPM: 6.5
Median nTPM: 14.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 54.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 41.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 34.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 33.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 33.2
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 30.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 29.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 29.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 28.9
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 28.8
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 28.7
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Brain - Putamen (basal ganglia)
Average nTPM: 24.5
Samples: 205

Max nTPM: 57.4
Min nTPM: 5.7
Std nTPM: 8.6
Median nTPM: 24.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 57.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 52.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 46.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 46.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 42.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 40.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 39.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 39.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 39.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 38.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 38.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 146.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.0
FF:10164-103B2 76 years, female 59.0
Nucleus accumbens
Scaled Tags Per Million: 61.1
FF:10037-101F1 23-56 years, mixed 61.1
Putamen
Scaled Tags Per Million: 67.5
FF:10176-103C5 60 years, female 67.5
Globus pallidus
Scaled Tags Per Million: 146.4
FF:10175-103C4 60 years, female 164.0
FF:10161-103A8 76 years, female 128.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 93.8
Pig sample Sample description nTPM
Caudate
nTPM: 63.8
Samples: 4

Max nTPM: 69.3
Min nTPM: 60.7
Sample A Female 61.4
Sample B Female 60.7
Sample C Male 69.3
Sample D Male 63.6
Putamen
nTPM: 89.6
Samples: 4

Max nTPM: 125.6
Min nTPM: 63.5
Sample A Female 125.6
Sample B Female 63.5
Sample C Male 73.0
Sample D Male 96.1
Septum
nTPM: 78.2
Samples: 4

Max nTPM: 83.3
Min nTPM: 70.8
Sample A Female 78.3
Sample B Female 70.8
Sample C Male 80.4
Sample D Male 83.3
Ventral pallidum
nTPM: 93.7
Samples: 4

Max nTPM: 116.8
Min nTPM: 62.8
Sample A Female 62.8
Sample B Female 80.3
Sample C Male 116.8
Sample D Male 115.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.3
Samples: 4

Max nTPM: 60.0
Min nTPM: 50.6
Sample A Male 60.0
Sample B Male 54.2
Sample C Female 56.2
Sample D Female 50.6
Septum
nTPM: 51.3
Samples: 4

Max nTPM: 67.0
Min nTPM: 40.6
Sample A Male 48.9
Sample B Male 40.6
Sample C Female 48.6
Sample D Female 67.0
Ventral forebrain
nTPM: 39.6
Samples: 4

Max nTPM: 43.3
Min nTPM: 31.6
Sample A Male 43.3
Sample B Male 42.5
Sample C Female 31.6
Sample D Female 40.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.7
75695662 Antisense, RP_060518_04_D01, Mouse strain C57BL/6J (56 days, male) 10.4
73906077 Antisense, RP_051212_04_F08, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 7.2
75695662 Antisense, RP_060518_04_D01, Mouse strain C57BL/6J (56 days, male) 13.3
73906077 Antisense, RP_051212_04_F08, Mouse strain C57BL/6J (56 days, male) 1.1

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