MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.3 nTPM
HPA Brain:136.5 nTPM
GTEx:25.3 nTPM
FANTOM5:112.4 Scaled Tags Per Million
Pig:113.8 nTPM
Mouse:111.3 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 136.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 123.3
1830 Male, age 51, unknown 146.7
1833 Male, age 53, unknown 137.0
1870 Female, age 42, unknown 132.5
2586 Male, age 75, left hemisphere 125.5
2019 Male, age 18, unknown 124.0
2411 Female, age 72, unknown 121.1
2828 Female, age 72, unknown 119.5
2219 Male, age 76, both hemispheres 118.3
2666 Male, age 74, left hemisphere 108.6
1827 Male, age 72, unknown 100.1
Dorsal raphe nucleus
nTPM: 99.3
2750 Male, age 76, both hemispheres 117.5
2016 Female, age 72, unknown 109.9
1828 Male, age 53, unknown 108.6
2047 Male, age 72, unknown 87.2
2298 Female, age 72, unknown 73.6
Inferior colliculus
nTPM: 101.2
2849 Male, age 72, unknown 123.1
1848 Female, age 42, unknown 106.6
1890 Male, age 53, unknown 98.1
2097 Female, age 72, unknown 77.1
Median raphe nucleus
nTPM: 112.0
2220 Male, age 76, midline 112.0
Periaquaductal grey, anterior
nTPM: 91.2
2502 Female, age 75, unknown 97.4
1947 Male, age 18, unknown 95.1
1795 Male, age 51, unknown 81.1
Periaquaductal grey, dorsal
nTPM: 101.2
2850 Male, age 76, both hemispheres 122.1
2464 Female, age 72, unknown 108.5
1831 Male, age 72, unknown 91.2
1840 Male, age 53, unknown 83.0
Periaquaductal grey, lateral
nTPM: 103.1
2140 Male, age 76, both hemispheres 124.7
2053 Male, age 18, unknown 97.0
2272 Male, age 74, both hemispheres 87.4
Pretectal area
nTPM: 97.1
2316 Male, age 76, right hemisphere 123.9
2407 Male, age 75, both hemispheres 114.5
1815 Male, age 53, unknown 110.5
2825 Male, age 18, unknown 105.0
2667 Female, age 75, unknown 103.6
1817 Female, age 42, unknown 100.0
2007 Male, age 72, unknown 89.1
2224 Female, age 72, unknown 88.7
2273 Male, age 74, both hemispheres 84.6
1944 Female, age 72, unknown 79.8
1816 Male, age 51, unknown 68.9
Red nucleus
nTPM: 136.5
1865 Male, age 51, unknown 161.9
2227 Male, age 72, unknown 148.6
2769 Male, age 72, unknown 147.9
1904 Male, age 53, unknown 147.1
1821 Female, age 72, unknown 139.5
2503 Female, age 72, unknown 138.0
2823 Male, age 76, right hemisphere 135.4
2785 Male, age 18, unknown 134.5
1954 Female, age 42, unknown 133.2
2588 Male, age 74, left hemisphere 127.3
2725 Female, age 75, unknown 115.5
2584 Male, age 75, left hemisphere 108.8
Substantia nigra
nTPM: 99.6
2699 Male, age 18, unknown 117.9
2409 Female, age 72, unknown 110.5
2583 Male, age 75, right hemisphere 109.7
2590 Female, age 75, unknown 106.7
1851 Male, age 51, unknown 103.1
1941 Male, age 53, unknown 95.9
1889 Female, age 72, unknown 94.8
2665 Male, age 74, both hemispheres 90.0
2241 Male, age 72, unknown 85.1
1916 Female, age 42, unknown 82.2
Superior colliculus
nTPM: 109.3
1913 Female, age 42, unknown 143.2
1995 Male, age 72, unknown 138.0
1839 Male, age 51, unknown 118.9
1895 Male, age 76, right hemisphere 114.1
2664 Male, age 75, both hemispheres 112.2
2587 Male, age 74, left hemisphere 105.4
2668 Female, age 75, unknown 101.3
1796 Male, age 53, unknown 92.5
2087 Female, age 72, unknown 84.5
2261 Male, age 18, unknown 82.6
Ventral tegmental area
nTPM: 101.2
2223 Female, age 72, unknown 115.8
2410 Female, age 72, unknown 106.6
2218 Male, age 76, both hemispheres 102.4
2021 Male, age 53, unknown 95.9
1942 Male, age 51, unknown 95.5
1915 Female, age 42, unknown 90.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.3
Samples: 139

Max nTPM: 50.1
Min nTPM: 8.7
Std nTPM: 7.9
Median nTPM: 24.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 50.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 49.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 46.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 41.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 40.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 38.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 38.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.4
FF:10158-103A5 76 years, female 112.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 113.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 113.8
Samples: 4

Max nTPM: 162.6
Min nTPM: 90.3
Sample A Female 99.6
Sample B Female 90.3
Sample C Male 102.7
Sample D Male 162.6
Midbrain
nTPM: 110.8
Samples: 4

Max nTPM: 151.3
Min nTPM: 86.8
Sample A Female 151.3
Sample B Female 116.9
Sample C Male 86.8
Sample D Male 88.0
Periaqueductal gray
nTPM: 96.9
Samples: 3

Max nTPM: 109.9
Min nTPM: 84.6
Sample B Female 109.9
Sample C Male 84.6
Sample D Male 96.2
Superior colliculi
nTPM: 95.3
Samples: 4

Max nTPM: 121.6
Min nTPM: 62.5
Sample A Female 95.1
Sample B Female 62.5
Sample C Male 101.8
Sample D Male 121.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 111.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.3
Samples: 4

Max nTPM: 117.3
Min nTPM: 107.3
Sample A Male 107.3
Sample B Male 108.7
Sample C Female 117.3
Sample D Female 112.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
75695662 Antisense, RP_060518_04_D01, Mouse strain C57BL/6J (56 days, male) 14.7
73906077 Antisense, RP_051212_04_F08, Mouse strain C57BL/6J (56 days, male) 2.0

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