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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
317.9
nTPM
FANTOM5:
561.5
Scaled Tags Per Million
Pig:
271.7
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
317.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 134.8
1984
Male, age 76, both hemispheres
140.3
2301
Female, age 85, both hemispheres
136.8
2188
Female, age 91, both hemispheres
136.1
2090
Male, age 80, both hemispheres
125.9
Dorsal cochlear nucleus nTPM: 140.8
2187
Female, age 91, both hemispheres
173.0
2058
Male, age 76, both hemispheres
163.0
2370
Male, age 61, both hemispheres
145.8
2802
Male, age 74, right hemisphere
120.5
2378
Male, age 80, both hemispheres
101.9
Dorsal tegmental nucleus nTPM: 180.0
2083
Male, age 80, both hemispheres
212.3
2326
Male, age 74, both hemispheres
181.7
2358
Male, age 61, both hemispheres
171.3
1936
Male, age 76, left hemisphere
154.5
Dorsolateral tegmental area nTPM: 214.3
2360
Male, age 74, both hemispheres
424.5
2654
Male, age 80, both hemispheres
189.3
2141
Male, age 76, both hemispheres
185.7
2751
Female, age 85, both hemispheres
161.6
2337
Male, age 61, both hemispheres
110.2
Kolliker-Fuse nucleus nTPM: 214.0
2163
Male, age 80, both hemispheres
307.6
2315
Male, age 76, right hemisphere
188.4
2793
Female, age 91, left hemisphere
146.2
Lateral lemniscal nuclei nTPM: 173.4
2169
Male, age 76, both hemispheres
227.7
2036
Male, age 80, both hemispheres
177.7
2453
Male, age 74, right hemisphere
169.6
2746
Female, age 85, left hemisphere
146.6
2320
Female, age 91, left hemisphere
145.4
Lateral parabrachial nucleus nTPM: 153.2
2139
Female, age 85, right hemisphere
193.9
2790
Male, age 61, both hemispheres
149.0
2013
Male, age 80, both hemispheres
143.1
2792
Male, age 76, both hemispheres
126.7
Lateral vestibular nucleus nTPM: 198.5
2184
Male, age 76, both hemispheres
222.3
2311
Male, age 80, both hemispheres
174.8
Locus coeruleus nTPM: 317.9
2123
Female, age 91, both hemispheres
459.2
2720
Male, age 74, both hemispheres
352.8
2014
Male, age 55, unknown
335.4
2317
Female, age 72, unknown
298.2
2162
Male, age 80, both hemispheres
268.1
1980
Male, age 76, both hemispheres
266.3
2788
Male, age 74, unknown
245.2
Medial parabrachial nucleus nTPM: 170.1
2156
Male, age 61, both hemispheres
206.2
2170
Female, age 91, both hemispheres
189.5
2854
Male, age 80, both hemispheres
161.3
2786
Male, age 76, both hemispheres
157.6
2463
Female, age 85, right hemisphere
135.8
Medial periolivary nuclei nTPM: 170.7
2063
Male, age 76, both hemispheres
250.8
2171
Female, age 85, both hemispheres
202.7
2791
Male, age 74, right hemisphere
154.8
2081
Male, age 80, both hemispheres
125.1
2458
Female, age 91, both hemispheres
120.0
Motor facial nucleus nTPM: 174.8
2062
Male, age 76, both hemispheres
265.5
2365
Male, age 74, right hemisphere
187.6
2327
Male, age 80, both hemispheres
184.8
2126
Male, age 61, both hemispheres
143.3
2697
Female, age 85, both hemispheres
142.2
2795
Female, age 91, both hemispheres
125.7
Motor trigeminal nucleus nTPM: 159.2
2079
Male, age 80, both hemispheres
185.7
2309
Male, age 76, both hemispheres
169.2
2335
Male, age 61, both hemispheres
164.8
2321
Female, age 91, both hemispheres
138.8
2560
Male, age 74, both hemispheres
137.4
Nuclei of the trapezoid body nTPM: 211.6
2159
Male, age 61, both hemispheres
299.7
1983
Male, age 76, both hemispheres
253.5
2735
Female, age 85, both hemispheres
223.2
2166
Male, age 80, both hemispheres
166.4
2368
Female, age 91, both hemispheres
115.4
Nucleus raphe magnus nTPM: 203.8
2160
Male, age 61, both hemispheres
272.0
2455
Male, age 74, both hemispheres
231.4
2172
Female, age 85, both hemispheres
223.1
2051
Male, age 76, both hemispheres
187.0
2328
Male, age 80, both hemispheres
177.4
2459
Female, age 91, both hemispheres
131.6
Paramedian reticular nucleus nTPM: 211.7
2057
Male, age 80, both hemispheres
280.9
2313
Male, age 61, both hemispheres
228.8
2050
Female, age 85, both hemispheres
205.5
2052
Male, age 76, both hemispheres
131.6
Pedunculopontine tegmental nucleus nTPM: 185.7
2334
Male, age 80, both hemispheres
229.8
1921
Female, age 85, both hemispheres
181.8
2338
Male, age 61, both hemispheres
145.4
Pontine nuclei nTPM: 209.7
1863
Male, age 55, unknown
282.2
2787
Female, age 85, both hemispheres
251.2
2109
Female, age 72, unknown
240.5
1968
Male, age 76, left hemisphere
236.8
2727
Male, age 61, right hemisphere
212.9
2454
Male, age 74, left hemisphere
175.0
2115
Male, age 80, left hemisphere
146.5
2319
Female, age 91, both hemispheres
132.8
Pontine raphe nucleus nTPM: 190.8
2122
Female, age 85, midline
219.8
2853
Male, age 76, midline
161.7
Posteroventral cochlear nucleus nTPM: 140.5
2752
Female, age 85, both hemispheres
214.1
2070
Male, age 76, both hemispheres
181.2
2371
Male, age 61, both hemispheres
127.9
2135
Female, age 91, both hemispheres
95.0
2341
Male, age 80, both hemispheres
84.3
Principal sensory trigeminal nucleus nTPM: 197.0
2158
Male, age 61, both hemispheres
259.6
2324
Male, age 76, both hemispheres
207.3
2008
Male, age 80, left hemisphere
185.1
2367
Female, age 91, left hemisphere
136.0
Reticular pontine nucleus, caudal nTPM: 167.1
2092
Male, age 76, both hemispheres
203.9
2332
Male, age 80, right hemisphere
194.6
2559
Male, age 74, both hemispheres
136.9
2457
Female, age 91, both hemispheres
133.1
Reticular pontine nucleus, oral nTPM: 168.1
2361
Male, age 74, both hemispheres
197.2
2012
Female, age 85, both hemispheres
182.1
1939
Male, age 80, both hemispheres
179.6
2167
Male, age 76, both hemispheres
158.3
2366
Female, age 91, both hemispheres
123.4
Reticulotegmental nucleus nTPM: 166.9
2325
Male, age 76, both hemispheres
199.6
2333
Male, age 80, both hemispheres
165.2
2322
Female, age 91, both hemispheres
161.6
2452
Male, age 74, both hemispheres
141.4
Spinal trigeminal nucleus, oral nTPM: 206.8
2164
Male, age 80, both hemispheres
236.8
2737
Female, age 85, both hemispheres
230.2
1978
Male, age 76, both hemispheres
153.3
Subcoeruleus area nTPM: 178.8
2323
Female, age 91, left hemisphere
263.2
1958
Male, age 80, both hemispheres
184.1
2089
Male, age 76, left hemisphere
180.8
2451
Male, age 74, both hemispheres
137.3
2369
Female, age 85, left hemisphere
128.7
Superior olive nTPM: 167.3
1875
Female, age 85, both hemispheres
187.0
2020
Male, age 76, both hemispheres
176.7
2364
Male, age 74, right hemisphere
172.9
2329
Male, age 80, right hemisphere
165.4
2561
Female, age 91, both hemispheres
134.5
Ventral periolivary nuclei nTPM: 175.4
2130
Female, age 85, both hemispheres
212.7
2165
Male, age 80, both hemispheres
198.7
2023
Male, age 76, both hemispheres
157.1
2794
Female, age 91, left hemisphere
133.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 159.3
2449
Male, age 74, both hemispheres
205.2
1959
Male, age 76, both hemispheres
179.9
2840
Female, age 85, both hemispheres
159.0
2161
Male, age 80, both hemispheres
154.3
2359
Male, age 61, both hemispheres
145.1
2456
Female, age 91, both hemispheres
112.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
