MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.6 nTPM
HPA Brain:59.9 nTPM
GTEx:36.6 nTPM
FANTOM5:137.2 Scaled Tags Per Million
Pig:119.9 nTPM
Mouse:10.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.7
2586 Male, age 75, left hemisphere 80.5
2828 Female, age 72, unknown 63.3
2019 Male, age 18, unknown 57.2
1830 Male, age 51, unknown 53.7
1833 Male, age 53, unknown 53.2
1870 Female, age 42, unknown 51.5
1827 Male, age 72, unknown 47.9
2219 Male, age 76, both hemispheres 47.1
2666 Male, age 74, left hemisphere 46.4
2411 Female, age 72, unknown 45.9
Dorsal raphe nucleus
nTPM: 48.8
2298 Female, age 72, unknown 52.5
2016 Female, age 72, unknown 49.0
2750 Male, age 76, both hemispheres 48.4
1828 Male, age 53, unknown 47.5
2047 Male, age 72, unknown 46.3
Inferior colliculus
nTPM: 45.7
1848 Female, age 42, unknown 48.5
2849 Male, age 72, unknown 48.3
1890 Male, age 53, unknown 43.0
2097 Female, age 72, unknown 43.0
Median raphe nucleus
nTPM: 47.5
2220 Male, age 76, midline 47.5
Periaquaductal grey, anterior
nTPM: 51.2
2502 Female, age 75, unknown 58.6
1947 Male, age 18, unknown 47.7
1795 Male, age 51, unknown 47.3
Periaquaductal grey, dorsal
nTPM: 43.7
2850 Male, age 76, both hemispheres 51.4
2464 Female, age 72, unknown 42.2
1831 Male, age 72, unknown 42.0
1840 Male, age 53, unknown 39.0
Periaquaductal grey, lateral
nTPM: 45.9
2140 Male, age 76, both hemispheres 47.0
2272 Male, age 74, both hemispheres 45.4
2053 Male, age 18, unknown 45.3
Pretectal area
nTPM: 47.6
2007 Male, age 72, unknown 51.8
2407 Male, age 75, both hemispheres 51.4
2825 Male, age 18, unknown 50.4
2316 Male, age 76, right hemisphere 50.0
2273 Male, age 74, both hemispheres 48.5
1817 Female, age 42, unknown 47.9
1815 Male, age 53, unknown 47.8
2667 Female, age 75, unknown 46.0
2224 Female, age 72, unknown 43.8
1944 Female, age 72, unknown 43.2
1816 Male, age 51, unknown 42.3
Red nucleus
nTPM: 59.9
2227 Male, age 72, unknown 68.1
2769 Male, age 72, unknown 66.8
2503 Female, age 72, unknown 65.6
2785 Male, age 18, unknown 62.0
1865 Male, age 51, unknown 61.2
1904 Male, age 53, unknown 60.8
2584 Male, age 75, left hemisphere 59.2
2588 Male, age 74, left hemisphere 59.2
1954 Female, age 42, unknown 57.4
1821 Female, age 72, unknown 53.9
2725 Female, age 75, unknown 53.6
2823 Male, age 76, right hemisphere 50.6
Substantia nigra
nTPM: 46.4
2583 Male, age 75, right hemisphere 61.3
1916 Female, age 42, unknown 50.9
1851 Male, age 51, unknown 49.2
2590 Female, age 75, unknown 48.8
2699 Male, age 18, unknown 48.0
2665 Male, age 74, both hemispheres 46.6
1941 Male, age 53, unknown 45.7
1889 Female, age 72, unknown 45.3
2409 Female, age 72, unknown 34.6
2241 Male, age 72, unknown 33.6
Superior colliculus
nTPM: 50.1
2664 Male, age 75, both hemispheres 67.2
1796 Male, age 53, unknown 59.7
1913 Female, age 42, unknown 58.6
1995 Male, age 72, unknown 55.3
1839 Male, age 51, unknown 50.3
2668 Female, age 75, unknown 46.1
2261 Male, age 18, unknown 43.3
2587 Male, age 74, left hemisphere 43.3
2087 Female, age 72, unknown 42.7
1895 Male, age 76, right hemisphere 34.2
Ventral tegmental area
nTPM: 47.9
2223 Female, age 72, unknown 60.0
1942 Male, age 51, unknown 51.2
1915 Female, age 42, unknown 47.3
2021 Male, age 53, unknown 46.8
2218 Male, age 76, both hemispheres 43.0
2410 Female, age 72, unknown 39.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 139

Max nTPM: 118.5
Min nTPM: 12.2
Std nTPM: 15.4
Median nTPM: 32.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 118.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 83.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 82.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 80.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 79.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 77.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 73.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 63.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.2
FF:10158-103A5 76 years, female 137.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 119.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.3
Samples: 4

Max nTPM: 139.9
Min nTPM: 63.7
Sample A Female 139.9
Sample B Female 87.0
Sample C Male 63.7
Sample D Male 106.7
Midbrain
nTPM: 119.9
Samples: 4

Max nTPM: 215.4
Min nTPM: 78.5
Sample A Female 215.4
Sample B Female 93.3
Sample C Male 78.5
Sample D Male 92.5
Periaqueductal gray
nTPM: 95.1
Samples: 3

Max nTPM: 102.3
Min nTPM: 88.3
Sample B Female 88.3
Sample C Male 102.3
Sample D Male 94.8
Superior colliculi
nTPM: 99.0
Samples: 4

Max nTPM: 143.2
Min nTPM: 62.4
Sample A Female 143.2
Sample B Female 62.4
Sample C Male 72.2
Sample D Male 118.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.7
Sample A Male 11.8
Sample B Male 8.7
Sample C Female 11.4
Sample D Female 11.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70545961 Antisense, RP_050623_03_C12, Mouse strain C57BL/6J (56 days, male) 0.6

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