HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:35.0 nTPM
GTEx:12.9 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:37.2 nTPM
Mouse:30.1 nTPM
Allen mouse:2.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019576
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Hippocampus
nTPM: 20.4
2148 Female, age 91, left hemisphere 23.5
2529 Female, age 94, left hemisphere 23.3
1911 Female, age 85, right hemisphere 22.6
1898 Male, age 80, left hemisphere 19.6
2621 Female, age 67, right hemisphere 19.4
1855 Male, age 76, left hemisphere 14.1
Dentate gyrus
nTPM: 18.9
1927 Female, age 91, both hemispheres 30.7
2531 Female, age 67, both hemispheres 19.6
2528 Male, age 74, both hemispheres 18.0
2246 Female, age 85, both hemispheres 17.8
2530 Female, age 94, left hemisphere 16.6
2010 Male, age 76, both hemispheres 10.7
Entorhinal gyrus
nTPM: 35.0
1938 Female, age 85, left hemisphere 45.1
2613 Female, age 94, left hemisphere 44.8
2764 Male, age 80, right hemisphere 40.4
1787 Male, age 76, left hemisphere 30.2
2686 Male, age 75, right hemisphere 28.7
2117 Female, age 91, right hemisphere 21.1
Hippocampus, CA1
nTPM: 20.6
2749 Male, age 80, left hemisphere 29.2
2527 Male, age 74, both hemispheres 22.3
2045 Male, age 76, both hemispheres 21.4
1873 Female, age 85, both hemispheres 15.6
2082 Female, age 91, right hemisphere 14.3
Hippocampus, CA2
nTPM: 19.6
2437 Female, age 94, left hemisphere 24.6
1892 Male, age 76, both hemispheres 23.9
2249 Male, age 74, both hemispheres 20.6
1940 Female, age 85, left hemisphere 18.3
2113 Female, age 91, right hemisphere 17.1
1963 Male, age 80, left hemisphere 13.2
Hippocampus, CA3
nTPM: 24.7
2137 Male, age 80, left hemisphere 34.8
1867 Male, age 76, both hemispheres 27.8
2620 Female, age 94, left hemisphere 24.7
1891 Female, age 85, both hemispheres 22.9
2436 Male, age 74, both hemispheres 19.2
2861 Female, age 67, both hemispheres 19.0
Parahippocampal cortex
nTPM: 30.1
1850 Male, age 80, both hemispheres 45.4
1990 Female, age 91, right hemisphere 35.8
1933 Female, age 85, both hemispheres 31.5
2532 Female, age 72, left hemisphere 30.2
2622 Female, age 67, right hemisphere 30.2
2692 Male, age 74, both hemispheres 28.8
2693 Female, age 94, both hemispheres 27.6
2250 Female, age 67, right hemisphere 26.2
2245 Female, age 91, both hemispheres 25.1
2018 Male, age 76, both hemispheres 20.3
Perirhinal gyrus
nTPM: 34.9
2848 Male, age 76, right hemisphere 41.2
1841 Female, age 85, right hemisphere 39.2
1847 Female, age 91, left hemisphere 38.4
1794 Male, age 80, right hemisphere 35.2
2521 Female, age 94, right hemisphere 20.8
Subiculum
nTPM: 24.7
1977 Female, age 85, both hemispheres 28.7
1901 Male, age 80, both hemispheres 27.7
2438 Female, age 94, left hemisphere 27.4
2619 Male, age 74, both hemispheres 25.8
2042 Male, age 76, both hemispheres 20.1
2729 Female, age 91, right hemisphere 18.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.9
Samples: 197

Max nTPM: 30.0
Min nTPM: 3.1
Std nTPM: 4.9
Median nTPM: 12.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 30.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 28.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 28.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 27.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 27.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 25.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 22.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 22.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 22.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 21.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 21.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.8
FF:10153-102I9 76 years, female 31.7
FF:10169-103B7 60 years, female 25.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.2
Pig sample Sample description nTPM
Subiculum
nTPM: 31.6
Samples: 4

Max nTPM: 37.7
Min nTPM: 24.7
Sample A Female 37.7
Sample B Female 24.7
Sample C Male 30.0
Sample D Male 33.9
Dorsal hippocampus
nTPM: 24.7
Samples: 4

Max nTPM: 43.9
Min nTPM: 16.0
Sample A Female 19.5
Sample B Female 19.3
Sample C Male 43.9
Sample D Male 16.0
Entorhinal cortex
nTPM: 37.2
Samples: 4

Max nTPM: 43.3
Min nTPM: 34.9
Sample A Female 34.9
Sample B Female 35.1
Sample C Male 43.3
Sample D Male 35.4
Ventral hippocampus
nTPM: 19.1
Samples: 4

Max nTPM: 23.3
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 18.1
Sample C Male 21.8
Sample D Male 23.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.1
Samples: 4

Max nTPM: 36.1
Min nTPM: 26.9
Sample A Male 28.9
Sample B Male 28.4
Sample C Female 26.9
Sample D Female 36.1
Hippocampal formation
nTPM: 17.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 13.7
Sample A Male 18.7
Sample B Male 20.6
Sample C Female 13.7
Sample D Female 18.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.2
69873917 Antisense, RP_050512_02_C08, Mouse strain C57BL/6J (56 days, male) 2.7
75084145 Antisense, RP_060412_04_D11, Mouse strain C57BL/6J (56 days, male) 1.6

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