MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA Brain:28.2 nTPM
GTEx:9.9 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:32.5 nTPM
Mouse:27.2 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2219 Male, age 76, both hemispheres 24.3
1833 Male, age 53, unknown 18.3
1827 Male, age 72, unknown 18.1
1870 Female, age 42, unknown 18.1
2411 Female, age 72, unknown 17.9
2586 Male, age 75, left hemisphere 16.2
1830 Male, age 51, unknown 15.0
2828 Female, age 72, unknown 14.1
2666 Male, age 74, left hemisphere 11.0
2019 Male, age 18, unknown 5.9
Dorsal raphe nucleus
nTPM: 18.1
2298 Female, age 72, unknown 19.9
2047 Male, age 72, unknown 19.5
1828 Male, age 53, unknown 17.8
2016 Female, age 72, unknown 17.0
2750 Male, age 76, both hemispheres 16.5
Inferior colliculus
nTPM: 23.1
2849 Male, age 72, unknown 27.8
1848 Female, age 42, unknown 26.7
1890 Male, age 53, unknown 18.9
2097 Female, age 72, unknown 18.9
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 18.7
1947 Male, age 18, unknown 24.8
2502 Female, age 75, unknown 16.5
1795 Male, age 51, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 17.7
1840 Male, age 53, unknown 25.0
2464 Female, age 72, unknown 16.7
2850 Male, age 76, both hemispheres 16.5
1831 Male, age 72, unknown 12.6
Periaquaductal grey, lateral
nTPM: 16.2
2053 Male, age 18, unknown 19.9
2140 Male, age 76, both hemispheres 16.3
2272 Male, age 74, both hemispheres 12.4
Pretectal area
nTPM: 12.2
2825 Male, age 18, unknown 22.5
2224 Female, age 72, unknown 17.6
2316 Male, age 76, right hemisphere 16.7
2273 Male, age 74, both hemispheres 13.0
2667 Female, age 75, unknown 12.6
1815 Male, age 53, unknown 9.4
1944 Female, age 72, unknown 9.1
2407 Male, age 75, both hemispheres 8.9
1817 Female, age 42, unknown 8.4
1816 Male, age 51, unknown 8.0
2007 Male, age 72, unknown 7.3
Red nucleus
nTPM: 13.4
2725 Female, age 75, unknown 18.1
1821 Female, age 72, unknown 15.6
2584 Male, age 75, left hemisphere 15.1
2769 Male, age 72, unknown 14.5
2227 Male, age 72, unknown 14.4
1954 Female, age 42, unknown 13.3
2588 Male, age 74, left hemisphere 13.3
2503 Female, age 72, unknown 13.2
2823 Male, age 76, right hemisphere 13.2
1904 Male, age 53, unknown 12.8
1865 Male, age 51, unknown 10.7
2785 Male, age 18, unknown 5.9
Substantia nigra
nTPM: 28.2
1916 Female, age 42, unknown 48.9
2241 Male, age 72, unknown 47.3
2699 Male, age 18, unknown 35.3
1851 Male, age 51, unknown 31.9
2665 Male, age 74, both hemispheres 26.0
2409 Female, age 72, unknown 24.2
1941 Male, age 53, unknown 23.7
2583 Male, age 75, right hemisphere 15.1
2590 Female, age 75, unknown 14.9
1889 Female, age 72, unknown 14.4
Superior colliculus
nTPM: 14.2
1895 Male, age 76, right hemisphere 22.6
1796 Male, age 53, unknown 20.0
1839 Male, age 51, unknown 20.0
2668 Female, age 75, unknown 16.7
2261 Male, age 18, unknown 14.9
2587 Male, age 74, left hemisphere 12.2
2664 Male, age 75, both hemispheres 10.7
2087 Female, age 72, unknown 9.1
1913 Female, age 42, unknown 8.4
1995 Male, age 72, unknown 7.4
Ventral tegmental area
nTPM: 24.6
2218 Male, age 76, both hemispheres 31.3
1915 Female, age 42, unknown 31.1
1942 Male, age 51, unknown 26.8
2410 Female, age 72, unknown 26.2
2223 Female, age 72, unknown 17.9
2021 Male, age 53, unknown 14.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 25.9
Min nTPM: 1.4
Std nTPM: 4.3
Median nTPM: 9.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 25.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 19.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 18.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 18.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 18.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 18.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 17.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 17.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 16.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 16.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.8
FF:10158-103A5 76 years, female 10.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.1
Samples: 4

Max nTPM: 27.4
Min nTPM: 15.7
Sample A Female 27.4
Sample B Female 18.1
Sample C Male 27.0
Sample D Male 15.7
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 56.5
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 18.2
Sample C Male 56.5
Sample D Male 35.1
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 26.1
Min nTPM: 18.1
Sample B Female 18.1
Sample C Male 21.8
Sample D Male 26.1
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 46.7
Min nTPM: 21.2
Sample A Female 27.0
Sample B Female 21.2
Sample C Male 46.7
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 30.4
Min nTPM: 23.6
Sample A Male 23.6
Sample B Male 28.6
Sample C Female 30.4
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69873917 Antisense, RP_050512_02_C08, Mouse strain C57BL/6J (56 days, male) 1.1
75084145 Antisense, RP_060412_04_D11, Mouse strain C57BL/6J (56 days, male) 0.6

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