MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.1 nTPM
HPA Brain:87.3 nTPM
GTEx:95.1 nTPM
FANTOM5:130.6 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:18.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.8
2411 Female, age 72, unknown 86.5
1870 Female, age 42, unknown 85.0
1827 Male, age 72, unknown 79.0
2019 Male, age 18, unknown 74.3
1833 Male, age 53, unknown 71.3
2666 Male, age 74, left hemisphere 68.3
2828 Female, age 72, unknown 68.2
1830 Male, age 51, unknown 67.7
2219 Male, age 76, both hemispheres 67.6
2586 Male, age 75, left hemisphere 60.0
Dorsal raphe nucleus
nTPM: 84.6
2298 Female, age 72, unknown 108.0
2750 Male, age 76, both hemispheres 84.2
2047 Male, age 72, unknown 82.1
1828 Male, age 53, unknown 75.4
2016 Female, age 72, unknown 73.1
Inferior colliculus
nTPM: 74.6
2097 Female, age 72, unknown 85.1
1848 Female, age 42, unknown 74.4
1890 Male, age 53, unknown 69.9
2849 Male, age 72, unknown 69.2
Median raphe nucleus
nTPM: 87.3
2220 Male, age 76, midline 87.3
Periaquaductal grey, anterior
nTPM: 79.0
1947 Male, age 18, unknown 87.8
2502 Female, age 75, unknown 76.4
1795 Male, age 51, unknown 72.9
Periaquaductal grey, dorsal
nTPM: 72.0
1840 Male, age 53, unknown 80.7
2850 Male, age 76, both hemispheres 74.9
2464 Female, age 72, unknown 66.9
1831 Male, age 72, unknown 65.5
Periaquaductal grey, lateral
nTPM: 73.7
2272 Male, age 74, both hemispheres 77.6
2140 Male, age 76, both hemispheres 72.7
2053 Male, age 18, unknown 70.7
Pretectal area
nTPM: 79.1
2224 Female, age 72, unknown 87.8
2273 Male, age 74, both hemispheres 85.4
1816 Male, age 51, unknown 83.0
2667 Female, age 75, unknown 82.6
1817 Female, age 42, unknown 82.4
2007 Male, age 72, unknown 81.2
1815 Male, age 53, unknown 78.0
1944 Female, age 72, unknown 77.3
2825 Male, age 18, unknown 75.3
2316 Male, age 76, right hemisphere 73.3
2407 Male, age 75, both hemispheres 63.3
Red nucleus
nTPM: 72.8
1821 Female, age 72, unknown 90.1
2725 Female, age 75, unknown 81.7
1954 Female, age 42, unknown 77.7
2503 Female, age 72, unknown 75.2
1865 Male, age 51, unknown 75.0
1904 Male, age 53, unknown 74.1
2227 Male, age 72, unknown 71.3
2769 Male, age 72, unknown 70.7
2785 Male, age 18, unknown 70.1
2823 Male, age 76, right hemisphere 67.9
2588 Male, age 74, left hemisphere 60.3
2584 Male, age 75, left hemisphere 60.0
Substantia nigra
nTPM: 85.9
1916 Female, age 42, unknown 107.5
2241 Male, age 72, unknown 106.3
1851 Male, age 51, unknown 95.1
1941 Male, age 53, unknown 88.4
1889 Female, age 72, unknown 86.9
2699 Male, age 18, unknown 78.6
2409 Female, age 72, unknown 76.7
2665 Male, age 74, both hemispheres 76.7
2590 Female, age 75, unknown 74.8
2583 Male, age 75, right hemisphere 67.8
Superior colliculus
nTPM: 71.4
2587 Male, age 74, left hemisphere 80.3
1796 Male, age 53, unknown 78.9
1895 Male, age 76, right hemisphere 78.6
2261 Male, age 18, unknown 75.4
2087 Female, age 72, unknown 74.1
1839 Male, age 51, unknown 70.3
2668 Female, age 75, unknown 70.2
1913 Female, age 42, unknown 67.6
1995 Male, age 72, unknown 62.8
2664 Male, age 75, both hemispheres 55.4
Ventral tegmental area
nTPM: 82.9
1915 Female, age 42, unknown 92.4
2410 Female, age 72, unknown 90.9
2223 Female, age 72, unknown 79.9
2218 Male, age 76, both hemispheres 79.8
1942 Male, age 51, unknown 79.0
2021 Male, age 53, unknown 75.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.1
Samples: 139

Max nTPM: 190.1
Min nTPM: 66.3
Std nTPM: 17.2
Median nTPM: 90.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 190.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 142.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 139.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 138.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 137.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 134.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 125.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 124.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 123.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 123.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 121.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.6
FF:10158-103A5 76 years, female 130.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 24.5
Min nTPM: 19.2
Sample A Female 24.5
Sample B Female 19.2
Sample C Male 20.0
Sample D Male 22.1
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 37.1
Min nTPM: 14.4
Sample A Female 37.1
Sample B Female 22.7
Sample C Male 15.7
Sample D Male 14.4
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 20.5
Min nTPM: 15.0
Sample B Female 20.5
Sample C Male 16.3
Sample D Male 15.0
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 22.5
Min nTPM: 17.7
Sample A Female 21.3
Sample B Female 22.5
Sample C Male 17.8
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.5
Sample A Male 20.0
Sample B Male 16.5
Sample C Female 18.3
Sample D Female 19.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68631893 Antisense, RP_050125_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1

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