MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.5 nTPM
HPA Brain:99.4 nTPM
GTEx:64.5 nTPM
FANTOM5:75.8 Scaled Tags Per Million
Pig:57.9 nTPM
Mouse:63.4 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.4
2586 Male, age 75, left hemisphere 149.0
2666 Male, age 74, left hemisphere 113.9
2828 Female, age 72, unknown 104.1
2019 Male, age 18, unknown 96.7
1827 Male, age 72, unknown 95.8
2219 Male, age 76, both hemispheres 94.0
1870 Female, age 42, unknown 86.5
1833 Male, age 53, unknown 83.9
1830 Male, age 51, unknown 83.2
2411 Female, age 72, unknown 76.8
Dorsal raphe nucleus
nTPM: 77.8
2750 Male, age 76, both hemispheres 87.5
2047 Male, age 72, unknown 81.8
1828 Male, age 53, unknown 80.6
2016 Female, age 72, unknown 71.7
2298 Female, age 72, unknown 67.6
Inferior colliculus
nTPM: 90.0
1890 Male, age 53, unknown 93.3
2849 Male, age 72, unknown 93.3
1848 Female, age 42, unknown 89.0
2097 Female, age 72, unknown 84.3
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 97.1
1795 Male, age 51, unknown 102.1
2502 Female, age 75, unknown 97.7
1947 Male, age 18, unknown 91.5
Periaquaductal grey, dorsal
nTPM: 80.0
2464 Female, age 72, unknown 87.1
1831 Male, age 72, unknown 85.3
1840 Male, age 53, unknown 84.0
2850 Male, age 76, both hemispheres 63.4
Periaquaductal grey, lateral
nTPM: 81.9
2053 Male, age 18, unknown 87.0
2140 Male, age 76, both hemispheres 80.9
2272 Male, age 74, both hemispheres 77.9
Pretectal area
nTPM: 93.6
1944 Female, age 72, unknown 118.2
1816 Male, age 51, unknown 111.3
2007 Male, age 72, unknown 108.7
2407 Male, age 75, both hemispheres 99.7
1817 Female, age 42, unknown 96.9
1815 Male, age 53, unknown 96.6
2316 Male, age 76, right hemisphere 91.4
2825 Male, age 18, unknown 87.0
2667 Female, age 75, unknown 79.9
2224 Female, age 72, unknown 73.9
2273 Male, age 74, both hemispheres 65.9
Red nucleus
nTPM: 88.4
2584 Male, age 75, left hemisphere 111.3
2588 Male, age 74, left hemisphere 107.8
2785 Male, age 18, unknown 100.5
2769 Male, age 72, unknown 93.5
2227 Male, age 72, unknown 93.2
1865 Male, age 51, unknown 84.1
2503 Female, age 72, unknown 83.3
2725 Female, age 75, unknown 81.8
1904 Male, age 53, unknown 80.0
1954 Female, age 42, unknown 78.0
2823 Male, age 76, right hemisphere 76.5
1821 Female, age 72, unknown 70.8
Substantia nigra
nTPM: 84.2
2665 Male, age 74, both hemispheres 104.4
2583 Male, age 75, right hemisphere 102.4
2590 Female, age 75, unknown 92.1
1941 Male, age 53, unknown 91.6
1916 Female, age 42, unknown 88.3
1851 Male, age 51, unknown 84.5
1889 Female, age 72, unknown 84.3
2699 Male, age 18, unknown 70.4
2241 Male, age 72, unknown 63.8
2409 Female, age 72, unknown 59.9
Superior colliculus
nTPM: 99.4
2664 Male, age 75, both hemispheres 127.9
2668 Female, age 75, unknown 109.0
2087 Female, age 72, unknown 107.0
2261 Male, age 18, unknown 107.0
1796 Male, age 53, unknown 97.8
1913 Female, age 42, unknown 95.1
1839 Male, age 51, unknown 90.4
2587 Male, age 74, left hemisphere 89.3
1895 Male, age 76, right hemisphere 88.3
1995 Male, age 72, unknown 82.0
Ventral tegmental area
nTPM: 77.8
2223 Female, age 72, unknown 87.0
1915 Female, age 42, unknown 80.5
1942 Male, age 51, unknown 79.2
2021 Male, age 53, unknown 74.6
2218 Male, age 76, both hemispheres 72.9
2410 Female, age 72, unknown 72.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.5
Samples: 139

Max nTPM: 113.1
Min nTPM: 34.1
Std nTPM: 12.0
Median nTPM: 63.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 113.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 98.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 97.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 93.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 87.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 85.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 84.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 83.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 81.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.8
FF:10158-103A5 76 years, female 75.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.3
Samples: 4

Max nTPM: 45.7
Min nTPM: 31.1
Sample A Female 45.7
Sample B Female 31.1
Sample C Male 39.8
Sample D Male 32.5
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 68.6
Min nTPM: 36.4
Sample A Female 36.4
Sample B Female 37.7
Sample C Male 68.6
Sample D Male 55.5
Periaqueductal gray
nTPM: 35.6
Samples: 3

Max nTPM: 41.0
Min nTPM: 30.9
Sample B Female 35.0
Sample C Male 41.0
Sample D Male 30.9
Superior colliculi
nTPM: 57.9
Samples: 4

Max nTPM: 70.3
Min nTPM: 41.7
Sample A Female 63.9
Sample B Female 41.7
Sample C Male 70.3
Sample D Male 55.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.4
Samples: 4

Max nTPM: 65.3
Min nTPM: 60.6
Sample A Male 64.5
Sample B Male 60.6
Sample C Female 63.1
Sample D Female 65.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
71211353 Antisense, RP_050816_01_C11, Mouse strain C57BL/6J (56 days, male) 7.1

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