MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.2 nTPM
HPA Brain:219.5 nTPM
GTEx:0.2 nTPM
FANTOM5:229.5 Scaled Tags Per Million
Mouse:0.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 219.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 172.6
2219 Male, age 76, both hemispheres 225.1
2586 Male, age 75, left hemisphere 203.3
2019 Male, age 18, unknown 193.8
1827 Male, age 72, unknown 193.3
2828 Female, age 72, unknown 174.9
2411 Female, age 72, unknown 165.6
1830 Male, age 51, unknown 151.8
1833 Male, age 53, unknown 145.6
1870 Female, age 42, unknown 144.3
2666 Male, age 74, left hemisphere 128.7
Dorsal raphe nucleus
nTPM: 199.4
2298 Female, age 72, unknown 328.0
2047 Male, age 72, unknown 180.4
2016 Female, age 72, unknown 177.7
1828 Male, age 53, unknown 160.0
2750 Male, age 76, both hemispheres 151.2
Inferior colliculus
nTPM: 181.3
2097 Female, age 72, unknown 228.7
1890 Male, age 53, unknown 187.5
1848 Female, age 42, unknown 163.6
2849 Male, age 72, unknown 145.3
Median raphe nucleus
nTPM: 124.0
2220 Male, age 76, midline 124.0
Periaquaductal grey, anterior
nTPM: 219.5
2502 Female, age 75, unknown 246.9
1795 Male, age 51, unknown 221.1
1947 Male, age 18, unknown 190.6
Periaquaductal grey, dorsal
nTPM: 171.8
1840 Male, age 53, unknown 207.6
2464 Female, age 72, unknown 178.2
1831 Male, age 72, unknown 176.9
2850 Male, age 76, both hemispheres 124.5
Periaquaductal grey, lateral
nTPM: 176.5
2053 Male, age 18, unknown 226.8
2272 Male, age 74, both hemispheres 190.6
2140 Male, age 76, both hemispheres 112.2
Pretectal area
nTPM: 218.7
2224 Female, age 72, unknown 300.6
2007 Male, age 72, unknown 280.3
1816 Male, age 51, unknown 249.2
2273 Male, age 74, both hemispheres 245.7
1817 Female, age 42, unknown 225.9
1815 Male, age 53, unknown 213.1
1944 Female, age 72, unknown 208.2
2667 Female, age 75, unknown 207.0
2407 Male, age 75, both hemispheres 169.3
2825 Male, age 18, unknown 159.9
2316 Male, age 76, right hemisphere 146.5
Red nucleus
nTPM: 153.4
2503 Female, age 72, unknown 196.0
2725 Female, age 75, unknown 176.9
1821 Female, age 72, unknown 161.1
1865 Male, age 51, unknown 155.8
2785 Male, age 18, unknown 155.4
2227 Male, age 72, unknown 152.6
2823 Male, age 76, right hemisphere 149.3
1904 Male, age 53, unknown 145.0
1954 Female, age 42, unknown 143.9
2769 Male, age 72, unknown 140.6
2584 Male, age 75, left hemisphere 135.2
2588 Male, age 74, left hemisphere 128.3
Substantia nigra
nTPM: 157.6
1889 Female, age 72, unknown 194.6
1916 Female, age 42, unknown 186.2
2665 Male, age 74, both hemispheres 170.9
1851 Male, age 51, unknown 160.7
2583 Male, age 75, right hemisphere 158.4
2590 Female, age 75, unknown 150.2
2409 Female, age 72, unknown 146.9
2699 Male, age 18, unknown 144.8
1941 Male, age 53, unknown 138.3
2241 Male, age 72, unknown 125.4
Superior colliculus
nTPM: 192.9
2587 Male, age 74, left hemisphere 219.6
1796 Male, age 53, unknown 217.0
2664 Male, age 75, both hemispheres 216.1
1995 Male, age 72, unknown 215.6
2261 Male, age 18, unknown 203.6
1895 Male, age 76, right hemisphere 191.9
1839 Male, age 51, unknown 182.4
2087 Female, age 72, unknown 167.0
1913 Female, age 42, unknown 159.4
2668 Female, age 75, unknown 156.6
Ventral tegmental area
nTPM: 164.4
2021 Male, age 53, unknown 186.1
2410 Female, age 72, unknown 176.5
1915 Female, age 42, unknown 173.7
1942 Male, age 51, unknown 155.2
2223 Female, age 72, unknown 151.6
2218 Male, age 76, both hemispheres 143.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.2
Samples: 139

Max nTPM: 1.5
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 0.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 0.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 0.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 0.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 0.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 0.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 229.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 229.5
FF:10158-103A5 76 years, female 229.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.5
Sample D Female 0.4

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